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Organismal phenotypes emerge from a complex set of genotypic interactions. While technological advances in sequencing provide a quantitative description of an organism's genotype, characterization of an organism's physical phenotype lags…

Biological Physics · Physics 2020-10-15 Vasyl Alba , James E. Carthew , Richard W. Carthew , Madhav Mani

Gene expression of social actions in Drosophilae has been attracting wide interest from biologists, medical scientists and psychologists. Gene-edited Drosophilae have been used as a test platform for experimental investigation. For example,…

Computer Vision and Pattern Recognition · Computer Science 2019-09-12 Khan Faraz , Ahmed Bouridane , Richard Jiang , Tiancheng Xia , Paul Chazot , Abdel Ennaceur

Even the simplest of animals exhibit behavioral sequences with complex temporal dynamics. Prominent amongst the proposed organizing principles for these dynamics has been the idea of a hierarchy, wherein the movements an animal makes can be…

Biological Physics · Physics 2017-02-08 Gordon J. Berman , William Bialek , Joshua W. Shaevitz

Deep phenotyping study has become an emerging field to understand the gene function and the structure of biological networks. For the living animal C. elegans, recent advances in genome-editing tools, microfluidic devices and phenotypic…

Quantitative Methods · Quantitative Biology 2019-05-08 Nan Xu

Drosophila melanogaster, a small dipteran of African origin, represents one of the best-studied model organisms. Early work in this system has uniquely shed light on the basic principles of genetics and resulted in a versatile collection of…

Populations and Evolution · Quantitative Biology 2018-10-12 Annabelle Haudry , Stefan Laurent , Martin Kapun

Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can…

Quantitative Methods · Quantitative Biology 2014-08-13 Gordon J. Berman , Daniel M. Choi , William Bialek , Joshua W. Shaevitz

Gene expression levels are important molecular quantitative traits that link genotypes to molecular functions and fitness. In Drosophila, population-genetic studies in recent years have revealed substantial adaptive evolution at the genomic…

Populations and Evolution · Quantitative Biology 2015-04-06 Armita Nourmohammad , Joachim Rambeau , Torsten Held , Johannes Berg , Michael Lassig

The fruit fly Drosophila is a classic model organism to study adaptation as well as the relationship between genetic variation and phenotypes. Although associated bacterial communities might be important for many aspects of Drosophila…

Populations and Evolution · Quantitative Biology 2015-06-12 Fabian Staubach , John F. Baines , Sven Kuenzel , Elisabeth M. Bik , Dmitri A. Petrov

Animal behavior serves as a reliable indicator of the adaptation of organisms to their environment and their overall well-being. Through rigorous observation of animal actions and interactions, researchers and observers can glean valuable…

Machine Learning · Computer Science 2024-05-24 Edoardo Fazzari , Donato Romano , Fabrizio Falchi , Cesare Stefanini

Naturally occurring networks exhibit quantitative features revealing underlying growth mechanisms. Numerous network mechanisms have recently been proposed to reproduce specific properties such as degree distributions or clustering…

Quantitative Methods · Quantitative Biology 2009-11-10 Manuel Middendorf , Etay Ziv , Chris Wiggins

As the bridge between genetic and physiological aspects, animal behaviour analysis is one of the most significant topics in biology and ecological research. However, identifying, tracking and recording animal behaviour are labour intensive…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Ziping Jiang , Paul L. Chazot , Richard Jiang

Although extensive behavioral changes often exist between closely related animal species, our understanding of the genetic basis underlying the evolution of behavior has remained limited. Here, we propose a new framework to study behavioral…

Populations and Evolution · Quantitative Biology 2020-07-21 Damián G. Hernández , Catalina Rivera , Jessica Cande , Baohua Zhou , David L. Stern , Gordon J. Berman

Deep phenotyping is an emerging conceptual paradigm and experimental approach that seeks to measure many aspects of phenotypes and link them to understand the underlying biology. Successful deep phenotyping has mostly been applied in…

Quantitative Methods · Quantitative Biology 2019-04-03 Nan Xu , Dhaval S. Patel , Hang Lu

We introduce and analyze a class of neural network models motivated by the Drosophila central complex nervous system, designed to capture the emergence and dynamics of orientation-selective activity bumps. Starting from a biologically…

Dynamical Systems · Mathematics 2026-04-22 S. Ismail , B. Ambrosio , M. A. Aziz-Alaoui , Y. Souleiman

Decoding the direction of translating objects in front of cluttered moving backgrounds, accurately and efficiently, is still a challenging problem. In nature, lightweight and low-powered flying insects apply motion vision to detect a moving…

Neurons and Cognition · Quantitative Biology 2020-07-03 Qinbing Fu , Shigang Yue

The evolution of high-dimensional phenotypes is investigated using a statistical physics model consists of interacting spins, in which genotypes, phenotypes, and environments are represented by spin configurations, interaction matrices, and…

Biological Physics · Physics 2020-06-24 Ayaka Sakata , Kunihiko Kaneko

Handedness in humans - better performance using either the left or right hand - is personally familiar, moderately heritable, and regulated by many genes, including those involved in general body symmetry. But behavioral handedness, i.e.…

Neurons and Cognition · Quantitative Biology 2016-07-13 Sean Buchanan , Jamey Kain , Benjamin de Bivort

Decoding the heterogeneity of biological neural systems is key to understanding the nervous system's complex dynamical behaviors. This study analyzes the comprehensive Drosophila brain connectome, which is the most recent data set,…

Neurons and Cognition · Quantitative Biology 2025-10-01 Xiaoyu Zhang , Pengcheng Yang , Yifei Zhang , Bowei Qin , Qiang Luo , Wei Lin , Xin Lu

Our understanding of the neural basis of locomotor behavior can be informed by careful quantification of animal movement. Classical descriptions of legged locomotion have defined discrete locomotor gaits, characterized by distinct patterns…

Neurons and Cognition · Quantitative Biology 2022-03-02 Ana I. Gonçalves , Jacob A. Zavatone-Veth , Megan R. Carey , Damon A. Clark

Functional studies in Drosophila have been key for establishing a role for the septin family of proteins in animal cell division and thus extending for the first time observations from the budding yeast to animal cells. Visualizing the…

Subcellular Processes · Quantitative Biology 2016-09-14 Manos Mavrakis
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