Related papers: DeepCenterline: a Multi-task Fully Convolutional N…

Brain extraction or whole brain segmentation is an important first step in many of the neuroimage analysis pipelines. The accuracy and robustness of brain extraction, therefore, is crucial for the accuracy of the entire brain analysis…

In this paper, we propose a fast fully convolutional neural network (FCNN) for crowd segmentation. By replacing the fully connected layers in CNN with 1 by 1 convolution kernels, FCNN takes whole images as inputs and directly outputs…

Fully convolutional networks (FCN) has significantly improved the performance of many pixel-labeling tasks, such as semantic segmentation and depth estimation. However, it still remains non-trivial to thoroughly utilize the multi-level…

Graph refinement, or the task of obtaining subgraphs of interest from over-complete graphs, can have many varied applications. In this work, we extract trees or collection of sub-trees from image data by, first deriving a graph-based…

Automatic segmentation of left ventricle (LV) myocardium in cardiac short-axis cine MR images acquired on subjects with myocardial infarction is a challenging task, mainly because of the various types of image inhomogeneity caused by the…

Identifying species of trees in aerial images is essential for land-use classification, plantation monitoring, and impact assessment of natural disasters. The manual identification of trees in aerial images is tedious, costly, and…

Automatic and accurate segmentation of aortic vessel tree (AVT) in computed tomography (CT) scans is crucial for early detection, diagnosis and prognosis of aortic diseases, such as aneurysms, dissections and stenosis. However, this task…

In this paper we propose a deep learning approach for segmenting sub-cortical structures of the human brain in Magnetic Resonance (MR) image data. We draw inspiration from a state-of-the-art Fully-Convolutional Neural Network (F-CNN)…

This work presents a method for semantic segmentation of mango trees in high resolution aerial imagery, and, a novel method for individual crown detection of mango trees using segmentation output. Mango Tree Net, a fully convolutional…

This work describes a novel methodology for automatic contour extraction from 2D images of 3D neurons (e.g. camera lucida images and other types of 2D microscopy). Most contour-based shape analysis methods can not be used to characterize…

Segmentation of retinal layers from Optical Coherence Tomography (OCT) volumes is a fundamental problem for any computer aided diagnostic algorithm development. This requires preprocessing steps such as denoising, region of interest…

Fully convolutional networks (FCNs), including UNet and VNet, are widely-used network architectures for semantic segmentation in recent studies. However, conventional FCN is typically trained by the cross-entropy or Dice loss, which only…

Although deep encoder-decoder networks have achieved astonishing performance for mitochondria segmentation from electron microscopy (EM) images, they still produce coarse segmentations with lots of discontinuities and false positives.…

The Deep Convolutional Neural Networks (CNNs) have obtained a great success for pattern recognition, such as recognizing the texts in images. But existing CNNs based frameworks still have several drawbacks: 1) the traditaional pooling…

Automatic medical image segmentation via convolutional neural networks (CNNs) has shown promising results. However, they may not always be robust enough for clinical use. Sub-optimal segmentation would require clinician's to manually…

Automated detection of curvilinear structures, e.g., blood vessels or nerve fibres, from medical and biomedical images is a crucial early step in automatic image interpretation associated to the management of many diseases. Precise…

Non-invasive detection of cardiovascular disorders from radiology scans requires quantitative image analysis of the heart and its substructures. There are well-established measurements that radiologists use for diseases assessment such as…

In this paper, we present a conceptually simple, strong, and efficient framework for panoptic segmentation, called Panoptic FCN. Our approach aims to represent and predict foreground things and background stuff in a unified fully…

The study objective was to investigate the performance of a dedicated convolutional neural network (CNN) optimized for wrist cartilage segmentation from 2D MR images. CNN utilized a planar architecture and patch-based (PB) training approach…

Building footprint information is an essential ingredient for 3-D reconstruction of urban models. The automatic generation of building footprints from satellite images presents a considerable challenge due to the complexity of building…