Related papers: Matching strings in encoded sequences
In this paper, we study the behaviour of the longest common substring for random subshifts of finite type (for dynamicists) or of the longest common substring for random sequences in random environments (for probabilists). We prove that,…
We consider rapidly mixing dynamical systems and link the decay of the shortest distance between multiple orbits with the generalized fractal dimension. We apply this result to multidimensional expanding maps and extend it to the realm of…
In this note, we studied the asymptotic behaviour of the length of the longest common substring for run-length encoded sequences. When the original sequences are generated by an $\alpha$-mixing process with exponential decay (or…
Maximal repetition of a string is the maximal length of a repeated substring. This paper investigates maximal repetition of strings drawn from stochastic processes. Strengthening previous results, two new bounds for the almost sure growth…
We study the minimal distance between two orbit segments of length n, in a random dynamical system with sufficiently good mixing properties. This problem has already been solved in non-random dynamical system, and on average in random…
A binary string transmitted via a memoryless i.i.d. deletion channel is received as a subsequence of the original input. From this, one obtains a posterior distribution on the channel input, corresponding to a set of candidate…
We investigate symbolic sequences and in particular information carriers as e.g. books and DNA--strings. First the higher order Shannon entropies are calculated, a characteristic root law is detected. Then the algorithmic entropy is…
We investigate symbolic sequences and in particular information carriers as e.g. books and DNA-strings. First the higher order Shannon entropies are calculated, a characteristic root law is detected. Then the algorithmic entropy is…
We discuss algorithms for estimating the Shannon entropy h of finite symbol sequences with long range correlations. In particular, we consider algorithms which estimate h from the code lengths produced by some compression algorithm. Our…
Consider two independent random strings having same length and taking values uniformly in a common finite alphabet. We study the order of the variance of the length of the longest common subsequences (LCS) of these strings when long blocks,…
Given a sequence composed of a limit number of characters, we try to "read" it as a "text". This involves to segment the sequence into "words". The difficulty is to distinguish good segmentation from enormous number of random ones.Aiming at…
The goal of this paper is to develop an estimate for the entropy of random long-range correlated symbolic sequences with elements belonging to a finite alphabet. As a plausible model, we use the high-order additive stationary ergodic Markov…
Consider a finite set of sources, each producing i.i.d. observations that follow a unique probability distribution on a finite alphabet. We study the problem of matching a finite set of observed sequences to the set of sources under the…
Entanglement entropies have revealed, in the last years, to be a powerful tool to extract information about the physics of condensed-matter systems. In the first part of this thesis, we show how to extract essential details about the…
In this paper, we study the behaviour of the shortest distance between orbits and show that under some rapidly mixing conditions, the decay of the shortest distance depends on the correlation dimension. For irrational rotations, we prove a…
We study some properties of binary sequences generated by random substitutions of constant length. Specifically, assuming the alphabet $\{0,1\}$, we consider the following asymmetric substitution rule of length $k$: $0 \to \langle 0, 0,…
Counting problems such as determining how many bit strings satisfy a given Boolean logic formula are notoriously hard. In many cases, even getting an approximate count is difficult. Here we propose that entanglement, a common concept in…
We study the N-step binary stationary ergodic Markov chain and analyze its differential entropy. Supposing that the correlations are weak we express the conditional probability function of the chain through the pair correlation function and…
We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…
In this paper, we consider a generalized longest common subsequence problem, in which a constraining sequence of length $s$ must be included as a substring and the other constraining sequence of length $t$ must be excluded as a subsequence…