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This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

Accurate topology is key when performing meaningful anatomical segmentations, however, it is often overlooked in traditional deep learning methods. In this work we propose TEDS-Net: a novel segmentation method that guarantees accurate…

Image and Video Processing · Electrical Eng. & Systems 2021-07-29 Madeleine K. Wyburd , Nicola K. Dinsdale , Ana I. L. Namburete , Mark Jenkinson

We develop online graph learning algorithms from streaming network data. Our goal is to track the (possibly) time-varying network topology, and effect memory and computational savings by processing the data on-the-fly as they are acquired.…

Signal Processing · Electrical Eng. & Systems 2020-07-08 Rasoul Shafipour , Gonzalo Mateos

Skeletonization extracts thin representations from images that compactly encode their geometry and topology. These representations have become an important topological prior for preserving connectivity in curvilinear structures, aiding…

Image and Video Processing · Electrical Eng. & Systems 2025-03-11 Luis D. Reyes Vargas , Martin J. Menten , Johannes C. Paetzold , Nassir Navab , Mohammad Farid Azampour

Seeking effective neural networks is a critical and practical field in deep learning. Besides designing the depth, type of convolution, normalization, and nonlinearities, the topological connectivity of neural networks is also important.…

Computer Vision and Pattern Recognition · Computer Science 2020-08-20 Kun Yuan , Quanquan Li , Jing Shao , Junjie Yan

In this paper we introduce the Ladder Algorithm; a novel recurrent algorithm to detect repetitive structures in natural images with high accuracy using little training data. We then demonstrate the algorithm on the task of extracting…

Computer Vision and Pattern Recognition · Computer Science 2020-04-09 Rhydian Windsor , Amir Jamaludin

Signal processing and machine learning algorithms for data supported over graphs, require the knowledge of the graph topology. Unless this information is given by the physics of the problem (e.g., water supply networks, power grids), the…

Signal Processing · Electrical Eng. & Systems 2021-02-11 Alberto Natali , Mario Coutino , Elvin Isufi , Geert Leus

Event reconstruction at the LHC, the task of assigning observed physics objects to their true origins, is a central challenge for precision measurements and searches. Many existing machine learning approaches address this problem but rely…

High Energy Physics - Experiment · Physics 2026-01-29 Nathalie Soybelman , Francesco A. Di Bello , Nilotpal Kakati , Eilam Gross

This paper studies the problem of recursively estimating the weighted adjacency matrix of a network out of a temporal sequence of binary-valued observations. The observation sequence is generated from nonlinear networked dynamics in which…

Systems and Control · Electrical Eng. & Systems 2019-12-06 Yu Xing , Xingkang He , Haitao Fang , Karl Henrik Johansson

We describe algorithms and data structures to extend a neural network library with automatic precision estimation for floating point computations. We also discuss conditions to make estimations exact and preserve high computation…

Data Structures and Algorithms · Computer Science 2025-09-30 Igor V. Netay

Classification of large and dense networks based on topology is very difficult due to the computational challenges of extracting meaningful topological features from real-world networks. In this paper we present a computationally tractable…

Machine Learning · Computer Science 2022-02-04 Tananun Songdechakraiwut , Bryan M. Krause , Matthew I. Banks , Kirill V. Nourski , Barry D. Van Veen

This paper presents an efficient algorithm for robust network reconstruction of Linear Time-Invariant (LTI) systems in the presence of noise, estimation errors and unmodelled nonlinearities. The method here builds on previous work on robust…

Dynamical Systems · Mathematics 2016-11-18 David Hayden , Ye Yuan , Jorge Gonçalves

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

Distribution grids constitute complex networks of lines often times reconfigured to minimize losses, balance loads, alleviate faults, or for maintenance purposes. Topology monitoring becomes a critical task for optimal grid scheduling.…

Optimization and Control · Mathematics 2017-07-24 Guido Cavraro , Vassilis Kekatos , Sriharsha Veeramachaneni

In order to detect patterns in real networks, randomized graph ensembles that preserve only part of the topology of an observed network are systematically used as fundamental null models. However, their generation is still problematic. The…

Data Analysis, Statistics and Probability · Physics 2014-01-14 Tiziano Squartini , Diego Garlaschelli

The reconstruction of phase spaces is an essential step to analyze time series according to Dynamical System concepts. A regression performed on such spaces unveils the relationships among system states from which we can derive their…

Machine Learning · Computer Science 2020-06-23 Lucas Pagliosa , Alexandru Telea , Rodrigo Mello

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

We propose a supervised machine learning approach for boosting existing signal and image recovery methods and demonstrate its efficacy on example of image reconstruction in computed tomography. Our technique is based on a local nonlinear…

Computer Vision and Pattern Recognition · Computer Science 2013-12-02 Joseph Shtok , Michael Zibulevsky , Michael Elad

We propose a novel deep reinforcement learning-based approach for 3D object reconstruction from monocular images. Prior works that use mesh representations are template based. Thus, they are limited to the reconstruction of objects that…

Computer Vision and Pattern Recognition · Computer Science 2021-09-27 Tarek Ben Charrada , Hedi Tabia , Aladine Chetouani , Hamid Laga