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The evolution of cooperation often depends upon population structure, yet nearly all models of cooperation implicitly assume that this structure remains static. This is a simplifying assumption, because most organisms possess genetic traits…

Populations and Evolution · Quantitative Biology 2012-08-03 Simon T. Powers , Alexandra S. Penn , Richard A. Watson

A large number of eukaryotic cells are able to directly detect external chemical gradients with great accuracy and the ultimate limit to their sensitivity has been a topic of debate for many years. Previous work has been done to understand…

Cell Behavior · Quantitative Biology 2015-05-20 Stuart A. Sevier , Herbert Levine

We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

Statistical Mechanics · Physics 2015-06-24 J. S. Sá Martins , D. Stauffer

Evolutionary transitions occur when previously-independent replicating entities unite to form more complex individuals. Such transitions have profoundly shaped natural evolutionary history and occur in two forms: fraternal transitions…

Populations and Evolution · Quantitative Biology 2023-10-10 Matthew Andres Moreno , Charles Ofria

Ecological systems comprise an astonishing diversity of species that cooperate or compete with each other forming complex mutual dependencies. The minimum requirements to maintain a large species diversity on long time scales are in general…

Populations and Evolution · Quantitative Biology 2012-09-10 Joachim Mathiesen , Namiko Mitarai , Kim Sneppen , Ala Trusina

Generalizing the cyclically competing three-species model (often referred to as the rock-paper-scissors game), we consider a simple system of population dynamics without spatial structures that involves four species. Unlike the previous…

Populations and Evolution · Quantitative Biology 2011-01-06 Sara O. Case , Clinton H. Durney , Michel Pleimling , R. K. P. Zia

Mixing maternal and paternal genomes is the base of plant sexual reproduction, but some so-called 'haploid inducer lines' lead to the formation of seeds bearing well-developed embryos with solely the maternal genome. A recent study adds a…

Subcellular Processes · Quantitative Biology 2022-10-07 Nathanaël Jacquier , Thomas Widiez

Occupancy models are frequently used by ecologists to quantify spatial variation in species distributions while accounting for observational biases in the collection of detection-nondetection data. However, the common assumption that a…

We study the Tangled Nature model of macro evolution and demonstrate that the co-evolutionary dynamics produces an increasingly correlated core of well occupied types. At the same time the entire configuration of types becomes increasing…

Statistical Mechanics · Physics 2015-03-13 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

Cyclic dominance between species may yield spiral waves that are known to provide a mechanism enabling persistent species coexistence. This observation holds true even in presence of spatial heterogeneity in the form of quenched disorder.…

Populations and Evolution · Quantitative Biology 2020-02-05 Ryan Baker , Michel Pleimling

The effect of phenotypic plasticity on evolution, the so-called Baldwin effect, has been studied extensively for more than 100 years. Plasticity is known to influence the speed of evolution towards a specific genetic configuration, but…

Populations and Evolution · Quantitative Biology 2017-12-27 Stefano Bennati , Leonel Aguilar , Dirk Helbing

How self-incompatibility systems are maintained in plant populations is still a debated issue. Theoretical models predict that self-incompatibility systems break down according to the intensity of inbreeding depression and number of…

Populations and Evolution · Quantitative Biology 2012-02-02 Miguel Navascués , Solenn Stoeckel , Stephanie Mariette

Suppose that females choose males based on attributes that do not signal any genetic quality that is not related to the choice itself. Can being choosy confer selective advantage in this situation? We introduce correlated strategies, which…

Populations and Evolution · Quantitative Biology 2023-09-28 Daniil Ryabko , Angustias Vaca , Prudencio Pazoca

Character evolution that affects ecological community interactions often occurs contemporaneously with temporal changes in population size, potentially altering the very nature of those dynamics. Such eco-evolutionary processes may be most…

Populations and Evolution · Quantitative Biology 2012-06-12 Laura E. Jones , Lutz Becks , Stephen P. Ellner , Nelson G. Hairston , Takehito Yoshida , Gregor F. Fussmann

The goal of this article is to contribute towards the conceptual and quantitative understanding of the evolutionary benefits for (microbial) populations to maintain a seed bank (consisting of dormant individuals) when facing fluctuating…

Probability · Mathematics 2024-07-02 Jochen Blath , Felix Hermann , Martin Slowik

The benefit of sexual recombination is one of the most fundamental questions both in population genetics and evolutionary computation. It is widely believed that recombination helps solving difficult optimization problems. We present the…

Neural and Evolutionary Computing · Computer Science 2015-02-11 Tobias Friedrich , Timo Kötzing , Martin Krejca , Andrew M. Sutton

We have developed a mathematical model that captures stress-induced mutagenesis, a fundamental aspect of pathogenic and neoplastic evolutionary dynamics, on the fitness landscape with multiple relevant genetic traits as a high-dimensional…

Populations and Evolution · Quantitative Biology 2023-03-17 Kien T. Pham , Duc M. Nguyen , Duy V. Tran , Vi D. Ao , Huy D. Tran , Tuan K. Do , Trung V. Phan

Cyclic dominant systems, like rock-paper-scissors game, are frequently used to explain biodiversity in nature, where mobility, reproduction and intransitive competition are on stage to provide the coexistence of competitors. A significantly…

Populations and Evolution · Quantitative Biology 2019-01-08 D. Bazeia , B. F. de Oliveira , A. Szolnoki

A simple model to encapsulate the essential growth properties of \emph{the web of human sexual contacts} is presented. In the model only heterosexual connection is considered and represented by a random growing bipartite graph where both…

Statistical Mechanics · Physics 2009-11-07 Guler Ergun

The interdependence between an individual strategy decision and the resulting change of environmental state is often a subtle process. Feedback-evolving games have been a prevalent framework for studying such feedback in well-mixed…

Populations and Evolution · Quantitative Biology 2025-03-05 Qiushuang Wang , Xiaojie Chen , Attila Szolnoki
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