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Advances in DNA sequencing mean databases of thousands of human genomes will soon be commonplace. In this paper we introduce a simple technique for reducing the size of conventional indexes on such highly repetitive texts. Given upper…

Data Structures and Algorithms · Computer Science 2015-06-16 H. Ferrada , T. Gagie , T. Hirvola , S. J. Puglisi

Language Reasoning Models (LRMs) achieve strong performance by scaling test-time computation but often suffer from ``overthinking'', producing excessively long reasoning traces that increase latency and memory usage. Existing LRMs typically…

Prompt compression methods enhance the efficiency of Large Language Models (LLMs) and minimize the cost by reducing the length of input context. The goal of prompt compression is to shorten the LLM prompt while maintaining a high generation…

Computation and Language · Computer Science 2025-08-25 Tinghui Zhang , Yifan Wang , Daisy Zhe Wang

To guarantee that an LLM's outputs conform to a specified structure, context-free grammar (CFG) decoding engines force the selection of next tokens that produce strings that conform to a given CFG. While current CFG-constrained decoding…

Artificial Intelligence · Computer Science 2026-05-29 Michael Sullivan , Alexander Koller

Large language models (LLMs) have been applied in various applications due to their astonishing capabilities. With advancements in technologies such as chain-of-thought (CoT) prompting and in-context learning (ICL), the prompts fed to LLMs…

Computation and Language · Computer Science 2023-12-07 Huiqiang Jiang , Qianhui Wu , Chin-Yew Lin , Yuqing Yang , Lili Qiu

As nowadays Machine Learning (ML) techniques are generating huge data collections, the problem of how to efficiently engineer their storage and operations is becoming of paramount importance. In this article we propose a new lossless…

Data Structures and Algorithms · Computer Science 2022-03-31 Paolo Ferragina , Travis Gagie , Dominik Köppl , Giovanni Manzini , Gonzalo Navarro , Manuel Striani , Francesco Tosoni

In this paper, we propose a new \emph{dynamic compressed index} of $O(w)$ space for a dynamic text $T$, where $w = O(\min(z \log N \log^*M, N))$ is the size of the signature encoding of $T$, $z$ is the size of the Lempel-Ziv77 (LZ77)…

Data Structures and Algorithms · Computer Science 2016-07-20 Takaaki Nishimoto , Tomohiro I , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Incorporating external knowledge in large language models (LLMs) enhances their utility across diverse applications, but existing methods have trade-offs. Retrieval-Augmented Generation (RAG) fetches evidence via similarity search, but key…

Computation and Language · Computer Science 2025-03-10 Giulio Corallo , Orion Weller , Fabio Petroni , Paolo Papotti

With the wide adoption of language models for IR -- and specifically RAG systems -- the latency of the underlying LLM becomes a crucial bottleneck, since the long contexts of retrieved passages lead large prompts and therefore, compute…

Information Retrieval · Computer Science 2026-04-06 Cornelius Kummer , Lena Jurkschat , Michael Färber , Sahar Vahdati

Large Language Models (LLMs) have made significant strides in natural language processing and generation, yet their ability to handle long-context input remains constrained by the quadratic complexity of attention computation and…

Computation and Language · Computer Science 2025-06-16 Manlai Liang , Wanyi Huang , Mandi Liu , Huaijun Li , Jinlong Li

Large Language Models (LLMs) excel at rewriting tasks such as text style transfer and grammatical error correction. While there is considerable overlap between the inputs and outputs in these tasks, the decoding cost still increases with…

Computation and Language · Computer Science 2025-01-24 Hao Zhang , Felix Stahlberg , Shankar Kumar

Sequential data is being generated at an unprecedented pace in various forms, including text and genomic data. This creates the need for efficient compression mechanisms to enable better storage, transmission and processing of such data. To…

Computation and Language · Computer Science 2018-11-21 Mohit Goyal , Kedar Tatwawadi , Shubham Chandak , Idoia Ochoa

Large Language Models (LLMs) have changed the way natural language processing works, but it is still hard to store and manage prompts efficiently in production environments. This paper presents LoPace (Lossless Optimized Prompt Accurate…

Databases · Computer Science 2026-02-17 Aman Ulla

Optimizing inference for long-context large language models (LLMs) is increasingly important due to the quadratic compute and linear memory cost of Transformers. Existing approximate inference methods, including key-value (KV) cache…

Computation and Language · Computer Science 2026-02-03 Kevin Galim , Ethan Ewer , Wonjun Kang , Minjae Lee , Hyung Il Koo , Kangwook Lee

The breakthrough performance of large language models (LLMs) comes with major computational footprints and high deployment costs. In this paper, we progress towards resolving this problem by proposing a novel structured compression approach…

Machine Learning · Computer Science 2023-10-27 Eldar Kurtic , Elias Frantar , Dan Alistarh

Despite the recent success of Large Language Models (LLMs), it remains challenging to feed LLMs with long prompts due to the fixed size of LLM inputs. As a remedy, prompt compression becomes a promising solution by removing redundant tokens…

Computation and Language · Computer Science 2025-01-06 Ziyang Yu , Yuyu Liu

We present an efficient algorithm for computing the LZ78 factorization of a text, where the text is represented as a straight line program (SLP), which is a context free grammar in the Chomsky normal form that generates a single string.…

Data Structures and Algorithms · Computer Science 2013-05-27 Hideo Bannai , Shunsuke Inenaga , Masayuki Takeda

Large language models (LLMs) with long context windows have gained significant attention. However, the KV cache, stored to avoid re-computation, becomes a bottleneck. Various dynamic sparse or TopK-based attention approximation methods have…

Computation and Language · Computer Science 2024-12-19 Zhuoming Chen , Ranajoy Sadhukhan , Zihao Ye , Yang Zhou , Jianyu Zhang , Niklas Nolte , Yuandong Tian , Matthijs Douze , Leon Bottou , Zhihao Jia , Beidi Chen

Given two positions $i$ and $j$ in a string $T$ of length $N$, a longest common extension (LCE) query asks for the length of the longest common prefix between suffixes beginning at $i$ and $j$. A compressed LCE data structure is a data…

Data Structures and Algorithms · Computer Science 2016-11-22 Tomohiro I

Large Language Models (LLMs) have demonstrated success across many benchmarks. However, they still exhibit limitations in long-context scenarios, primarily due to their short effective context length, quadratic computational complexity, and…

Computation and Language · Computer Science 2025-09-26 Manlai Liang , Mandi Liu , Jiangzhou Ji , Huaijun Li , Haobo Yang , Yaohan He , Jinlong Li