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Related papers: Fast crystallization of rotating membrane proteins

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It was recently shown that wet active matter may form synchronized rotating vortices in a square lattice, similar to an antiferromagnetic Ising model (by considering rotation direction as spin projections). In this letter, we investigate…

Soft Condensed Matter · Physics 2024-10-23 Felipe P. S. Junior , Jorge L. C. Domingos , W. P. Ferreira , F. Q. Potiguar

We report on a large scale computer simulation study of crystal nucleation in hard spheres. Through a combined analysis of real and reciprocal space data, a picture of a two-step crystallization process is supported: First dense, amorphous…

Soft Condensed Matter · Physics 2015-05-18 T. Schilling , H. J. Schope , M. Oettel , G. Opletal , I. Snook

Hydrodynamic interactions can generate rich emergent structures in active matter systems. Using large-scale hydrodynamic simulations, we demonstrate that hydrodynamic coupling alone can drive spontaneous self-organization across a hierarchy…

Soft Condensed Matter · Physics 2025-11-17 Zaiyi Shen , Leilei Wang , Shishuang Zhang , Chenlu Li , Kaili Xie , Xu Zheng , Juho S. Lintuvuori

We have carried out computer simulations of overcompressed suspensions of hard monodisperse ellipsoids and observed their crystallization dynamics. The system was compressed very rapidly in order to reach the regime of slow, glass-like…

Soft Condensed Matter · Physics 2013-10-01 Sven Dorosz , Tanja Schilling

Ratchet effects can appear for particles interacting with an asymmetric potential under ac driving or for a thermal system in which a substrate is periodically flashed. Here, we show that a new type of collective ratchet effect can arise…

Soft Condensed Matter · Physics 2025-07-16 C. Reichhardt , C. J. O. Reichhardt

We examine a two-dimensional system of sterically repulsive interacting disks where each particle runs in a random direction. This system is equivalent to a run-and-tumble dynamics system in the limit where the run time is infinite. At low…

Soft Condensed Matter · Physics 2017-12-06 C. Reichhardt , C. J. Olson Reichhardt

Active matter, whose motion is driven, and glasses, whose dynamics are arrested, seem to lie at opposite ends of the spectrum in nonequilibrium systems. In spite of this, both classes of systems exhibit a multitude of stable states that are…

Statistical Mechanics · Physics 2014-06-10 K. R. Pilkiewicz , J. D. Eaves

We examine the crystallization dynamics of nanoparticles reversibly tethered by DNA hybridization. We show that the crystallization happens readily only in a narrow temperature "slot," and always proceeds via a two-step process, mediated by…

Soft Condensed Matter · Physics 2010-08-13 Wei Dai , Sanat K. Kumar , Francis W. Starr

Phagocytosis is the process of engulfment and internalization of comparatively large particles by the cell, that plays a central role in the functioning of our immune system. We study the process of phagocytosis by considering a simplified…

Soft Condensed Matter · Physics 2022-01-05 Raj Kumar Sadhu , Sarah R Barger , Samo Penič , Aleš Iglič , Mira Krendel , Nils C Gauthier , Nir S Gov

As the places where most of the fuel of the cell, namely ATP, is synthesized, mitochondria are crucial organelles in eukaryotic cells. The shape of the invaginations of the mitochondria inner membrane, known as cristae, has been identified…

In the wake of previous studies on the rattling-and-jumping diffusion in smectic liquid crystal phases of colloidal rods, we analyze here for the first time the heterogeneous dynamics in columnar phases. More specifically, we perform…

Soft Condensed Matter · Physics 2015-05-19 Simone Belli , Alessandro Patti , René van Roij , Marjolein Dijkstra

We study, numerically, the collective dynamics of self-rotating nonaligning particles by considering a monolayer of spheres driven by constant clockwise or counterclockwise torques. We show that hydrodynamic interactions alter the emergence…

Soft Condensed Matter · Physics 2016-03-24 Kyongmin Yeo , Enkeleida Lushi , Petia M. Vlahovska

With the recent production of polar molecules in the quantum regime, long-range dipolar interactions are expected to facilitate the understanding of strongly interacting many-body quantum systems and to realize lattice spin models for…

Adding a non-adsorbing polymer to passive colloids induces an attraction between the particles via the `depletion' mechanism. High enough polymer concentrations lead to phase separation. We combine experiments, theory and simulations to…

Soft Condensed Matter · Physics 2016-07-13 J. Schwarz-Linek , C. Valeriani , A. Cacciuto , M. E. Cates , D. Marenduzzo , A. N. Morozov , W. C. K. Poon

Context. As a star evolves, the planet orbits change with time due to tidal interactions, stellar mass losses, friction and gravitational drag forces, mass accretion and evaporation on/by the planet. Stellar rotation modifies the structure…

Earth and Planetary Astrophysics · Physics 2016-06-15 Giovanni Privitera , Georges Meynet , Patrick Eggenberger , Aline A. Vidotto , Eva Villaver , Michele Bianda

Allostery refers to the puzzling phenomenon of long-range communication between distant sites in proteins. Despite its importance in biomolecular regulation and signal transduction, the underlying dynamical process is not well understood.…

Biological Physics · Physics 2024-08-28 Ahmed A. A. I. Ali , Emanuel Dorbath , Gerhard Stock

Active matter describes materials whose constituents are driven out of equilibrium by continuous energy consumption, for instance from ATP. Due to the orientable character of the constituents, active suspensions can attain liquid…

Soft Condensed Matter · Physics 2020-11-03 L. N. Carenza , G. Gonnella , G. Negro

A system of atoms connected by harmonic springs to their nearest neighbors on a lattice is coupled to Ising spins that are in contact with a thermal bath and evolve under Glauber dynamics. Assuming a nearest-neighbor antiferromagnetic…

Statistical Mechanics · Physics 2016-10-19 M Ruiz-Garcia , L L Bonilla , A Prados

We present experiments demonstrating tube formation in giant unilamellar vesicles that are suspended in a bath of swimming E. coli bacteria. We chose the lipids such that the bacteria have no adhereing interaction with the membrane. The…

Soft Condensed Matter · Physics 2025-09-19 Makarand Diwe , P B Sunil Kumar , Pramod Pullarkat

Biological membranes are elastic media in which the presence of a transmembrane protein leads to local bilayer deformation. The energetics of deformation allow two membrane proteins in close proximity to influence each other's equilibrium…

Subcellular Processes · Quantitative Biology 2015-06-26 Tristan Ursell , Kerwyn Huang , Eric Peterson , Rob Phillips
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