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Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for understanding genome diversity. Yet, handling large graphs can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-29 Jiajie Li , Jan-Niklas Schmelzle , Yixiao Du , Simon Heumos , Andrea Guarracino , Giulia Guidi , Pjotr Prins , Erik Garrison , Zhiru Zhang

Modeling data sharing in GPU programs is a challenging task because of the massive parallelism and complex data sharing patterns provided by GPU architectures. Better GPU caching efficiency can be achieved through careful task scheduling…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-04 Lingda Li , Ari B. Hayes , Stephen A. Hackler , Eddy Z. Zhang , Mario Szegedy , Shuaiwen Leon Song

This paper wants to focus on providing a characterization of the runtime performances of state-of-the-art implementations of KGE alghoritms, in terms of memory footprint and execution time. Despite the rapidly growing interest in KGE…

Machine Learning · Computer Science 2020-11-10 Angelica Sofia Valeriani

In recent years, the CNNs have achieved great successes in the image processing tasks, e.g., image recognition and object detection. Unfortunately, traditional CNN's classification is found to be easily misled by increasingly complex image…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-12 Xingyao Zhang , Shuaiwen Leon Song , Chenhao Xie , Jing Wang , Weigong Zhang , Xin Fu

Graph Neural Network (GNN) on streaming graphs has gained increasing popularity. However, its practical deployment remains challenging, as the inference process relies on Runtime Embedding Computation (RTEC) to capture recent graph changes.…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-24 Qiange Wang , Haoran Lv , Yanfeng Zhang , Weng-Fai Wong , Bingsheng He

Deep neural networks (DNNs) continue to grow rapidly in size, making them infeasible to train on a single device. Pipeline parallelism is commonly used in existing DNN systems to support large-scale DNN training by partitioning a DNN into…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-29 Byungsoo Jeon , Mengdi Wu , Shiyi Cao , Sunghyun Kim , Sunghyun Park , Neeraj Aggarwal , Colin Unger , Daiyaan Arfeen , Peiyuan Liao , Xupeng Miao , Mohammad Alizadeh , Gregory R. Ganger , Tianqi Chen , Zhihao Jia

Graph Neural Networks (GNNs) have emerged as the state-of-the-art graph learning method. However, achieving efficient GNN inference on edge devices poses significant challenges, limiting their application in real-world edge scenarios. This…

Machine Learning · Computer Science 2025-12-16 Ao Zhou , Jianlei Yang , Tong Qiao , Yingjie Qi , Zhi Yang , Weisheng Zhao , Chunming Hu

Simulation speed matters for neuroscientific research: this includes not only how quickly the simulated model time of a large-scale spiking neuronal network progresses, but also how long it takes to instantiate the network model in computer…

Graph Neural Networks (GNNs) have shown success in learning from graph-structured data, with applications to fraud detection, recommendation, and knowledge graph reasoning. However, training GNN efficiently is challenging because: 1) GPU…

Machine Learning · Computer Science 2021-11-12 Seung Won Min , Kun Wu , Mert Hidayetoğlu , Jinjun Xiong , Xiang Song , Wen-mei Hwu

Graph Neural Networks (GNNs) have experienced rapid advancements in recent years due to their ability to learn meaningful representations from graph data structures. However, in most real-world settings, such as financial transaction…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-30 Pranjal Naman , Yogesh Simmhan

Graph Convolutional Networks (GCNs) have achieved impressive empirical advancement across a wide variety of semi-supervised node classification tasks. Despite their great success, training GCNs on large graphs suffers from computational and…

Machine Learning · Computer Science 2021-11-02 Weilin Cong , Morteza Ramezani , Mehrdad Mahdavi

Graph neural networks have emerged as a powerful model for graph representation learning to undertake graph-level prediction tasks. Various graph pooling methods have been developed to coarsen an input graph into a succinct graph-level…

Machine Learning · Computer Science 2021-09-27 Xiaowei Zhou , Jie Yin , Ivor W. Tsang

Many real world graphs contain time domain information. Temporal Graph Neural Networks capture temporal information as well as structural and contextual information in the generated dynamic node embeddings. Researchers have shown that these…

Machine Learning · Computer Science 2022-07-04 Hongkuan Zhou , Da Zheng , Israt Nisa , Vasileios Ioannidis , Xiang Song , George Karypis

Traditional verification methods in chip design are highly time-consuming and computationally demanding, especially for large scale circuits. Graph neural networks (GNNs) have gained popularity as a potential solution to improve…

Machine Learning · Computer Science 2025-12-15 Kiran Thorat , Hongwu Peng , Yuebo Luo , Xi Xie , Shaoyi Huang , Amit Hasan , Jiahui Zhao , Yingjie Li , Zhijie Shi , Cunxi Yu , Caiwen Ding

For computational fluid dynamics (CFD) applications with a large number of grid points/cells, parallel computing is a common efficient strategy to reduce the computational time. How to achieve the best performance in the modern…

Performance · Computer Science 2018-03-12 Yong-Xian Wang , Li-Lun Zhang , Wei Liu , Xing-Hua Cheng , Yu Zhuang , Anthony T. Chronopoulos

Graph Neural Networks (GNNs) offer a compact and computationally efficient way to learn embeddings and classifications on graph data. GNN models are frequently large, making distributed minibatch training necessary. The primary contribution…

Machine Learning · Computer Science 2024-04-22 Alok Tripathy , Katherine Yelick , Aydin Buluc

Node classification has gained significant importance in graph deep learning with real-world applications such as recommendation systems, drug discovery, and citation networks. Graph Convolutional Networks and Graph Transformers have…

Social and Information Networks · Computer Science 2025-04-04 Aman Singh , Shahid Shafi Dar , Ranveer Singh , Nagendra Kumar

Network representation learning has traditionally been used to find lower dimensional vector representations of the nodes in a network. However, there are very important edge driven mining tasks of interest to the classical network analysis…

Social and Information Networks · Computer Science 2019-12-12 Sambaran Bandyopadhyay , Anirban Biswas , M. N. Murty , Ramasuri Narayanam

Graph Convolutional Networks (GCNs) is the state-of-the-art method for learning graph-structured data, and training large-scale GCNs requires distributed training across multiple accelerators such that each accelerator is able to hold a…

Machine Learning · Computer Science 2022-03-22 Cheng Wan , Youjie Li , Cameron R. Wolfe , Anastasios Kyrillidis , Nam Sung Kim , Yingyan Lin

Heterogeneous graphs are pervasive in practical scenarios, where each graph consists of multiple types of nodes and edges. Representation learning on heterogeneous graphs aims to obtain low-dimensional node representations that could…

Machine Learning · Computer Science 2021-01-01 Le Yu , Leilei Sun , Bowen Du , Chuanren Liu , Weifeng Lv , Hui Xiong