Related papers: Capacity Results for the Noisy Shuffling Channel
DNA is emerging as an increasingly attractive medium for data storage due to a number of important and unique advantages it offers, most notably the unprecedented durability and density. While the technology is evolving rapidly, the…
Scrambling quantum systems have attracted attention as effective substrates for temporal information processing. Here we consider a quantum reservoir processing framework that captures a broad range of physical computing models with quantum…
With the rapid increase of available digital data, DNA storage is identified as a storage media with high density and capability of long-term preservation, especially for archival storage systems. However, the encoding density (i.e., how…
In many real-world problems, we are dealing with collections of high-dimensional data, such as images, videos, text and web documents, DNA microarray data, and more. Often, high-dimensional data lie close to low-dimensional structures…
The yearly global production of data is growing exponentially, outpacing the capacity of existing storage media, such as tape and disk, and surpassing our ability to store it. DNA storage - the representation of arbitrary information as…
We consider the situation in which a transmitter attempts to communicate reliably over a discrete memoryless channel while simultaneously ensuring covertness (low probability of detection) with respect to a warden, who observes the signals…
Fundamental limits of the cognitive interference channel (CIC) with two pairs of transmitter-receiver has been under exploration for several years. In this paper, we study the discrete memoryless cognitive interference channel (DM-CIC) in…
Living cell signaling systems include multistep biochemical signaling reaction cascades (BSCs) comprising modifications of molecular signaling proteins. Substantial data on BSCs have been accumulated in the field of molecular biology and…
The shotgun sequencing process involves fragmenting a long DNA sequence (input string) into numerous shorter, unordered, and overlapping segments (referred to as \emph{reads}). The reads are sequenced, and later aligned to reconstruct the…
We consider the problem of communicating over a channel that breaks the message block into fragments of random lengths, shuffles them out of order, and deletes a random fraction of the fragments. Such a channel is motivated by applications…
For information transmission a binary symmetric channel is used. There is also another noisy binary symmetric channel (feedback channel), and the transmitter observes without delay all the outputs of the forward channel via that feedback…
Exponential increase of data has motivated advances of data storage technologies. As a promising storage media, DeoxyriboNucleic Acid (DNA) storage provides a much higher data density and superior durability, compared with state-of-the-art…
We consider the problem of collaborative filtering from a channel coding perspective. We model the underlying rating matrix as a finite alphabet matrix with block constant structure. The observations are obtained from this underlying matrix…
Because of DNA appealing features as perfect material, including minuscule size, defined structural repeat and rigidity, programmable DNA-mediated processing is a promising computing paradigm, which employs DNAs as information storing and…
Noisy label learning aims to train deep neural networks using a large amount of samples with noisy labels, whose main challenge comes from how to deal with the inaccurate supervision caused by wrong labels. Existing works either take the…
There is increasing realization in neuroscience that information is represented in the brain, e.g., neocortex, hippocampus, in the form sparse distributed codes (SDCs), a kind of cell assembly. Two essential questions are: a) how are such…
The fading broadcast channel with confidential messages (BCC) is investigated, where a source node has common information for two receivers (receivers 1 and 2), and has confidential information intended only for receiver 1. The confidential…
The objects of study of this paper are communication channels in which the dominant type of noise are symbol shifts, the main motivating examples being timing and bit-shift channels. Two channel models are introduced and their zero-error…
RNA can be used as a high-density medium for data storage and transmission; however, an important RNA process -- replication -- is noisy. This paper presents an error analysis for RNA as a data transmission medium, analyzing how deletion…
We formulate sequence to sequence transduction as a noisy channel decoding problem and use recurrent neural networks to parameterise the source and channel models. Unlike direct models which can suffer from explaining-away effects during…