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In this paper, we suggest a novel sampling method for Monte Carlo molecular simulations. In order to perform efficient sampling of molecular systems, it is advantageous to avoid extremely high energy configurations while also retaining the…

Computational Physics · Physics 2019-07-18 Katsuhiro Endo , Daisuke Yuhara , Kenji Yasuoka

In the absence of directional motion it is often hard to recognize athermal fluctuations. Probability currents provide such a measure in terms of the rate at which they enclose area in the reduced phase space. We measure this area enclosing…

We discuss an event-by-event fluctuation analysis of particle production in heavy ion collisions. We compare different approaches to the evaluation of the event-by-event dynamical fluctuations in quantities defined on groups of particles,…

Nuclear Theory · Physics 2009-10-31 S. A. Voloshin , V. Koch , H. G. Ritter

Transport phenomena in complex and dynamic microscopic environments are fundamentally shaped by hydrodynamic interactions. In particular, microparticle transport in porous media is governed by the delicate interplay between…

We study the hopping transport of a quantum particle through randomly diluted percolation clusters in two dimensions realized both on the square and triangular lattices. We investigate the nature of localization of the particle by…

Disordered Systems and Neural Networks · Physics 2007-09-27 Md Fhokrul Islam , Hisao Nakanishi

Natural phenomena frequently involve a very large number of interacting molecules moving in confined regions of space. Cellular transport by motor proteins is an example of such collective behavior. We derive a deterministic compartmental…

Subcellular Processes · Quantitative Biology 2017-11-01 Yoram Zarai , Michael Margaliot , Anatoly B. Kolomeisky

We analyse collective motion that occurs during rare (large deviation) events in systems of active particles, both numerically and analytically. We discuss the associated dynamical phase transition to collective motion, which occurs when…

Statistical Mechanics · Physics 2021-02-10 Yann-Edwin Keta , Étienne Fodor , Frédéric van Wijland , Michael E. Cates , Robert L. Jack

Extreme weather is one of the main mechanisms through which climate change will directly impact human society. Coping with such change as a global community requires markedly improved understanding of how global warming drives extreme…

Computational Physics · Physics 2019-09-18 Adam Rupe , Karthik Kashinath , Nalini Kumar , Victor Lee , Prabhat , James P. Crutchfield

Electron hydrodynamics arises when momentum-relaxing scattering processes are slow compared to momentum-conserving ones. While the microscopic details necessary to satisfy this condition are material-specific, experimentally accessible…

Materials Science · Physics 2022-04-14 Georgios Varnavides , Adam S. Jermyn , Polina Anikeeva , Prineha Narang

Relationships between sediment flux and geomorphic processes are combined with statements of mass conservation, in order to create continuum models of hillslope evolution. These models have parameters which can be calibrated using available…

Geophysics · Physics 2019-01-30 Jacob Calvert , Márton Balázs , Katerina Michaelides

We propose a new clustering method based on optimal transportation. We solve optimal transportation with variational principles, and investigate the use of power diagrams as transportation plans for aggregating arbitrary domains into a…

Computer Vision and Pattern Recognition · Computer Science 2018-07-27 Liang Mi , Wen Zhang , Xianfeng Gu , Yalin Wang

A new computational method is presented for study suspensions of charged soft particles undergoing fluctuating hydrodynamic and electrostatic interactions. The proposed model is appropriate for polymers, proteins and porous particles…

Soft Condensed Matter · Physics 2015-04-14 Juan P. Hernandez-Ortiz , Juan J. de Pablo

We consider a coarse-grained description of a system of self-propelled particles given by hydrodynamic equations for the density and polarization fields. We find that the ordered moving or flocking state of the system is unstable to spatial…

Statistical Mechanics · Physics 2013-05-29 Shradha Mishra , Aparna Baskaran , M. Cristina Marchetti

The most general description of the classical world is in terms of local densities (such as number, momentum, energy), and these typically evolve according to evolution equations of hydrodynamic form. To explain the emergent classicality of…

Quantum Physics · Physics 2007-05-23 J. J. Halliwell

We consider the nonequilibrium protocol where two semi-infinite gapped XXZ chains, initially prepared in different equilibrium states, are suddenly joint together. At large times, a generalized hydrodynamic description applies, according to…

Statistical Mechanics · Physics 2017-09-15 Lorenzo Piroli , Jacopo De Nardis , Mario Collura , Bruno Bertini , Maurizio Fagotti

We describe a novel approach to statistical learning from particles tracked while moving in a random environment. The problem consists in inferring properties of the environment from recorded snapshots. We consider here the case of a fluid…

Information Theory · Computer Science 2008-06-09 Michael Chertkov , Lukas Kroc , Massimo Vergassola

The evolution of piecewise constant distributions of a conserved quantity related to the frozen-in canonical vorticity in effectively two-dimensional incompressible ideal EMHD flows is analytically investigated by the Hamiltonian method.…

Plasma Physics · Physics 2007-05-23 V. P. Ruban , S. L. Senchenko

This work is a numerical experiment of stochastic motion of conservative Hamiltonian system or weakly damped Brownian particles. The objective is to prove the existence of path probability and to compute its values. By observing a large…

Statistical Mechanics · Physics 2012-02-09 Lin Tongling , Pujos Cyril , Ou Congjie , Bi Wenping , Calvayrac Florent , Wang Qiuping A

We derive the hydrodynamic equations of motion for a fluid of active particles described by under- damped Langevin equations that reduce to the Active-Brownian-Particle model, in the overdamped limit. The contraction into the hydrodynamic…

Statistical Mechanics · Physics 2017-06-07 Stefano Steffenoni , Gianmaria Falasco , Klaus Kroy

We discuss several algorithms for sampling from unnormalized probability distributions in statistical physics, but using the language of statistics and machine learning. We provide a self-contained introduction to some key ideas and…

Computation · Statistics 2025-05-05 Michael F. Faulkner , Samuel Livingstone