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We use topological data analysis to study "functional networks" that we construct from time-series data from both experimental and synthetic sources. We use persistent homology with a weight rank clique filtration to gain insights into…

Quantitative Methods · Quantitative Biology 2017-05-24 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

We propose a general technique for extracting a larger set of stable information from persistent homology computations than is currently done. The persistent homology algorithm is usually viewed as a procedure which starts with a filtered…

Computational Geometry · Computer Science 2021-01-29 Paul Bendich , Peter Bubenik , Alexander Wagner

We consider the topology of simplicial complexes with vertices the points of a random point process and faces determined by distance relationships between the vertices. In particular, we study the Betti numbers of these complexes as the…

Probability · Mathematics 2015-09-10 D. Yogeshwaran , Eliran Subag , Robert J. Adler

High-quality training data is the foundation of machine learning and artificial intelligence, shaping how models learn and perform. Although much is known about what types of data are effective for training, the impact of the data's…

Machine Learning · Computer Science 2025-10-21 Yang Ba , Mohammad Sadeq Abolhasani , Rong Pan

Motivated by persistent homology and topological data analysis, we consider formal sums on a metric space with a distinguished subset. These formal sums, which we call persistence diagrams, have a canonical 1-parameter family of metrics…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Iryna Hartsock

Data samples collected for training machine learning models are typically assumed to be independent and identically distributed (iid). Recent research has demonstrated that this assumption can be problematic as it simplifies the manifold of…

Machine Learning · Computer Science 2019-10-16 Kaixuan Zhang , Qinglong Wang , Xue Liu , C. Lee Giles

Persistent Homology (PH) and Artificial Neural Networks (ANNs) offer contrasting approaches to inferring topological structure from data. In this study, we examine the noise robustness of a supervised neural network trained to predict Betti…

Computer Vision and Pattern Recognition · Computer Science 2025-09-12 Dylan Peek , Matthew P. Skerritt , Stephan Chalup

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

Topological data analysis can reveal higher-order structure beyond pairwise connections between vertices in complex networks. We present a new method based on discrete Morse theory to study topological properties of unweighted and…

Discrete Mathematics · Computer Science 2019-10-01 Harish Kannan , Emil Saucan , Indrava Roy , Areejit Samal

In this paper, we derive a simple method for separating topological noise from topological features using a novel measure for comparing persistence barcodes called persistent entropy.

Information Theory · Computer Science 2016-05-11 Nieves Atienza , Rocio Gonzalez-Diaz , Matteo Rucco

Persistent homology is a tool that can be employed to summarize the shape of data by quantifying homological features. When the data is an object in $\mathbb{R}^d$, the (augmented) persistent homology transform ((A)PHT) is a family of…

Computational Geometry · Computer Science 2022-12-27 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

This paper investigates the propreties of the persistence diagrams stemming from almost surely continuous random processes on $[0,t]$. We focus our study on two variables which together characterize the barcode : the number of points of the…

Probability · Mathematics 2022-11-08 Daniel Perez

We develop persistent homology in the setting of filtrations of (Cech) closure spaces. Examples of filtrations of closure spaces include metric spaces, weighted graphs, weighted directed graphs, and filtrations of topological spaces. We use…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Nikola Milićević

We study the space of oriented genus g subsurfaces of a fixed manifold M, and in particular its homological properties. We construct a "scanning map" which compares this space to the space of sections of a certain fibre bundle over M…

Algebraic Topology · Mathematics 2017-06-14 Federico Cantero Morán , Oscar Randal-Williams

In recent years there has been noticeable interest in the study of the "shape of data". Among the many ways a "shape" could be defined, topology is the most general one, as it describes an object in terms of its connectivity structure:…

Machine Learning · Statistics 2017-09-22 Tullia Padellini , Pierpaolo Brutti

We present a topology-informed approach for classifying particle jets using persistent homology, a framework that captures the structural properties of point clouds. Particle jets produced in proton-proton collisions consist of cascades of…

High Energy Physics - Phenomenology · Physics 2026-01-06 Saurav Mittal

We say a model is continuous in utilities (resp., preferences) if small perturbations of utility functions (resp., preferences) generate small changes in the model's outputs. While similar, these two questions are different. They are only…

Theoretical Economics · Economics 2024-03-05 Pablo Schenone

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology. Although persistence barcodes and diagrams have permitted…

Applications · Statistics 2019-01-08 Raoul R. Wadhwa , Andrew Dhawan , Drew F. K. Williamson , Jacob G. Scott

A topological shape analysis is proposed and utilized to learn concepts that reflect shape commonalities. Our approach is two-fold: i) a spatial topology analysis of point cloud segment constellations within objects. Therein constellations…

Computer Vision and Pattern Recognition · Computer Science 2018-11-22 Christian A. Mueller , Andreas Birk

In this paper we present a novel methodology based on a topological entropy, the so-called persistent entropy, for addressing the comparison between discrete piecewise linear functions. The comparison is certified by the stability theorem…

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