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Transformers, adapted from natural language processing, are emerging as a leading approach for graph representation learning. Contemporary graph transformers often treat nodes or edges as separate tokens. This approach leads to…

Machine Learning · Computer Science 2023-10-04 Zihan Pengmei , Zimu Li , Chih-chan Tien , Risi Kondor , Aaron R. Dinner

Tabular datasets are widely used in scientific disciplines such as biology. While these disciplines have already adopted AI methods to enhance their findings and analysis, they mainly use tree-based methods due to their interpretability. At…

Machine Learning · Computer Science 2025-04-16 Salvatore Raieli , Nathalie Jeanray , Stéphane Gerart , Sebastien Vachenc , Abdulrahman Altahhan

The Transformer is an extremely powerful and prominent deep learning architecture. In this work, we challenge the commonly held belief in deep learning that going deeper is better, and show an alternative design approach that is building…

Machine Learning · Computer Science 2022-11-10 Jason Ross Brown , Yiren Zhao , Ilia Shumailov , Robert D Mullins

The discovery of the lazy neuron phenomenon in trained Transformers, where the vast majority of neurons in their feed-forward networks (FFN) are inactive for each token, has spurred tremendous interests in activation sparsity for enhancing…

We present a generalization of Transformers to any-order permutation invariant data (sets, graphs, and hypergraphs). We begin by observing that Transformers generalize DeepSets, or first-order (set-input) permutation invariant MLPs. Then,…

Machine Learning · Computer Science 2022-01-25 Jinwoo Kim , Saeyoon Oh , Seunghoon Hong

Scaling model performance typically requires increasing model size. Looped Transformer offers a compelling alternative by iteratively reusing the same Transformer blocks, trading additional computation for improved performance without…

Machine Learning · Computer Science 2026-05-26 Rao Fu , Zixuan Yang , Jiankun Zhang , Jing Ma , Hechang Chen , Yu Li , Yi Chang

In recent years, numerous Transformer-based models have been applied to long-term time-series forecasting (LTSF) tasks. However, recent studies with linear models have questioned their effectiveness, demonstrating that simple linear layers…

Machine Learning · Computer Science 2024-08-20 Jiaheng Yin , Zhengxin Shi , Jianshen Zhang , Xiaomin Lin , Yulin Huang , Yongzhi Qi , Wei Qi

Pretrained Transformer encoders are the dominant approach to sequence labeling. While some alternative architectures-such as xLSTMs, structured state-space models, diffusion models, and adversarial learning-have shown promise in language…

Computation and Language · Computer Science 2026-03-19 Ana Ezquerro , Carlos Gómez-Rodríguez , David Vilares

Owing to success in the data-rich domain of natural images, Transformers have recently become popular in medical image segmentation. However, the pairing of Transformers with convolutional blocks in varying architectural permutations leaves…

Computer Vision and Pattern Recognition · Computer Science 2023-04-11 Saikat Roy , Gregor Koehler , Michael Baumgartner , Constantin Ulrich , Jens Petersen , Fabian Isensee , Klaus Maier-Hein

When training transformers on graph-structured data, incorporating information about the underlying topology is crucial for good performance. Topological masking, a type of relative position encoding, achieves this by upweighting or…

The Transformer model is widely successful on many natural language processing tasks. However, the quadratic complexity of self-attention limit its application on long text. In this paper, adopting a fine-to-coarse attention mechanism on…

Computation and Language · Computer Science 2019-11-12 Zihao Ye , Qipeng Guo , Quan Gan , Xipeng Qiu , Zheng Zhang

Recent advancements in the NLP field showed that transfer learning helps with achieving state-of-the-art results for new tasks by tuning pre-trained models instead of starting from scratch. Transformers have made a significant improvement…

Computation and Language · Computer Science 2020-09-14 Aysu Ezen-Can

The Transformer architecture has become a cornerstone of modern artificial intelligence, but its core self-attention mechanism suffers from a complexity bottleneck that scales quadratically with sequence length, severely limiting its…

Machine Learning · Computer Science 2025-08-29 Zhongpan Tang

The recently introduced path-star task is a minimal task designed to exemplify limitations to the abilities of language models (Bachmann and Nagarajan, 2024). It involves a path-star graph where multiple arms radiate from a single starting…

Computation and Language · Computer Science 2025-05-21 Arvid Frydenlund

A fundamental procedure in the analysis of massive datasets is the construction of similarity graphs. Such graphs play a key role for many downstream tasks, including clustering, classification, graph learning, and nearest neighbor search.…

Machine Learning · Computer Science 2023-01-11 CJ Carey , Jonathan Halcrow , Rajesh Jayaram , Vahab Mirrokni , Warren Schudy , Peilin Zhong

Recent methods aim to merge neural networks (NNs) with identical architectures trained on different tasks into a single multi-task model. While most works focus on the simpler setup of merging NNs initialized from a common pre-trained…

Machine Learning · Computer Science 2025-08-18 Edan Kinderman , Itay Hubara , Haggai Maron , Daniel Soudry

Transductive tasks on graphs differ fundamentally from typical supervised machine learning tasks, as the independent and identically distributed (i.i.d.) assumption does not hold among samples. Instead, all train/test/validation samples are…

Machine Learning · Computer Science 2024-11-21 Hamed Shirzad , Honghao Lin , Ameya Velingker , Balaji Venkatachalam , David Woodruff , Danica Sutherland

In the context of inverse problems $\bf y = Ax$, sparse recovery offers a powerful paradigm shift by enabling the stable solution of ill-posed or underdetermined systems through the exploitation of structure, particularly sparsity. Sparse…

Image and Video Processing · Electrical Eng. & Systems 2025-06-03 Di An , Dylan Poppert , Jiayue Li , Mark Foster , Trac D. Tran

Humans can naturally learn new and varying tasks in a sequential manner. Continual learning is a class of learning algorithms that updates its learned model as it sees new data (on potentially new tasks) in a sequence. A key challenge in…

Machine Learning · Computer Science 2025-03-04 Masih Eskandar , Tooba Imtiaz , Davin Hill , Zifeng Wang , Jennifer Dy

This paper introduces a high-order Markov chain task to investigate how transformers learn to integrate information from multiple past positions with varying statistical significance. We demonstrate that transformers learn this task…

Machine Learning · Computer Science 2026-02-24 Oğuz Kaan Yüksel , Rodrigo Alvarez Lucendo , Nicolas Flammarion