Related papers: Covering a tree with rooted subtrees
The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…
Phylogenetic networks are a flexible model of evolution that can represent reticulate evolution and handle complex data. Tree-based networks, which are phylogenetic networks that have a spanning tree with the same root and leaf-set as the…
The Traveling Salesman Problem (often called TSP) is a classic algorithmic problem in the field of computer science and operations research. It is an NP-Hard problem focused on optimization. TSP has several applications even in its purest…
The general communication tree embedding problem is the problem of mapping a set of communicating terminals, represented by a graph G, into the set of vertices of some physical network represented by a tree T. In the case where the vertices…
Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…
Cycle packing is a fundamental problem in optimization, graph theory, and algorithms. Motivated by recent advancements in finding vertex-disjoint paths between a specified set of vertices that either minimize the total length of the paths…
Starting with M(a), an n X n asymmetric cost matrix, Jonker and Volgenannt transformed it into a 2n X 2n symmetric cost matrix, M(s)where M(s) has unusual properties. One such property is that an optimal tour in M(s) yields an optimal tour…
In this paper, we present a polynomial-sized linear programming formulation of the Traveling Salesman Problem (TSP). The proposed linear program is a network flow-based model. Numerical implementation issues and results are discussed. (The…
The supertree construction problem is about combining several phylogenetic trees with possibly conflicting information into a single tree that has all the leaves of the source trees as its leaves and the relationships between the leaves are…
The problem of selecting small groups of itemsets that represent the data well has recently gained a lot of attention. We approach the problem by searching for the itemsets that compress the data efficiently. As a compression technique we…
Path partition problems on trees have found various applications. In this paper, we present an $O(n \log n)$ time algorithm for solving the following variant of path partition problem: given a rooted tree of $n$ nodes $1, \ldots, n$, where…
We introduce a novel approach of using important cuts which allowed us to design significantly faster fixed-parameter tractable (FPT) algorithms for the following routing problems: the Mixed Chinese Postman Problem parameterized by the…
We consider the bilevel minimum spanning tree (BMST) problem where the leader and the follower choose a spanning tree together, according to different objective functions. By showing that this problem is NP-hard in general, we answer an…
We analyze two classic variants of the Traveling Salesman Problem using the toolkit of fine-grained complexity. Our first set of results is motivated by the Bitonic TSP problem: given a set of $n$ points in the plane, compute a shortest…
In a large-scale network, we want to choose some influential nodes to make a profit by paying some cost within a limited budget so that we do not have to spend more budget on some nodes adjacent to the chosen nodes; our problem is the…
A common strategy for improving optimization algorithms is to restart the algorithm when it is believed to be trapped in an inferior part of the search space. However, while specific restart strategies have been developed for specific…
We study the Steiner Tree problem on unit disk graphs. Given a $n$ vertex unit disk graph $G$, a subset $R\subseteq V(G)$ of $t$ vertices and a positive integer $k$, the objective is to decide if there exists a tree $T$ in $G$ that spans…
It is required to find an optimal order of constructing the edges of a network so as to minimize the sum of the weighted connection times of relevant pairs of vertices. Construction can be performed anytime anywhere in the network, with a…
The Traveling Thief Problem (TTP) is a multi-component optimization problem that captures the interplay between routing and packing decisions by combining the classical Traveling Salesperson Problem (TSP) and the Knapsack Problem (KP). The…
We study the problem of connecting the parts of a multipartite graph using a minimum number of edges under a matching constraint. We introduce interconnection trees, defined as matchings whose projections onto the quotient graph form a…