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To store and search genomic databases efficiently, researchers have recently started building compressed self-indexes based on grammars. In this paper we show how, given a straight-line program with $r$ rules for a string (S [1..n]) whose…

Data Structures and Algorithms · Computer Science 2012-09-28 Travis Gagie , Paweł Gawrychowski , Juha Kärkkäinen , Yakov Nekrich , Simon J. Puglisi

We introduce data structures answering queries concerning the occurrences of patterns from a given dictionary $\mathcal{D}$ in fragments of a given string $T$ of length $n$. The dictionary is internal in the sense that each pattern in…

Data Structures and Algorithms · Computer Science 2019-09-26 Panagiotis Charalampopoulos , Tomasz Kociumaka , Manal Mohamed , Jakub Radoszewski , Wojciech Rytter , Tomasz Waleń

String matching is the problem of finding all the substrings of a text which match a given pattern. It is one of the most investigated problems in computer science, mainly due to its very diverse applications in several fields. Recently,…

Data Structures and Algorithms · Computer Science 2017-07-04 Domenico Cantone , Simone Faro , Arianna Pavone

Importance of document clustering is now widely acknowledged by researchers for better management, smart navigation, efficient filtering, and concise summarization of large collection of documents like World Wide Web (WWW). The next…

Information Retrieval · Computer Science 2011-12-30 Muhammad Rafi , M. Shahid Shaikh , Amir Farooq

String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…

Data Structures and Algorithms · Computer Science 2023-03-13 Thierry Lecroq

Popularized by the Differentiable Search Index, the emerging paradigm of generative retrieval re-frames the classic information retrieval problem into a sequence-to-sequence modeling task, forgoing external indices and encoding an entire…

Information Retrieval · Computer Science 2023-05-22 Ronak Pradeep , Kai Hui , Jai Gupta , Adam D. Lelkes , Honglei Zhuang , Jimmy Lin , Donald Metzler , Vinh Q. Tran

One technique to improve the retrieval effectiveness of a search engine is to expand documents with terms that are related or representative of the documents' content.From the perspective of a question answering system, this might comprise…

Information Retrieval · Computer Science 2019-09-26 Rodrigo Nogueira , Wei Yang , Jimmy Lin , Kyunghyun Cho

In a dynamic retrieval system, documents must be ingested as they arrive, and be immediately findable by queries. Our purpose in this paper is to describe an index structure and processing regime that accommodates that requirement for…

Information Retrieval · Computer Science 2023-01-12 Alistair Moffat , Joel Mackenzie

Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string…

Data Structures and Algorithms · Computer Science 2016-12-07 Philip Bille , Inge Li Gørtz , Frederik Rye Skjoldjensen

We consider the problem of indexing a string $t$ of length $n$ to report the occurrences of a query pattern $p$ containing $m$ characters and $j$ wildcards. Let $occ$ be the number of occurrences of $p$ in $t$, and $\sigma$ the size of the…

Data Structures and Algorithms · Computer Science 2012-09-07 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , Søren Vind

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…

Data Structures and Algorithms · Computer Science 2019-08-19 Simone Faro , Arianna Pavone , Francesco Pio Marino

Indexing highly repetitive texts - such as genomic databases, software repositories and versioned text collections - has become an important problem since the turn of the millennium. A relevant compressibility measure for repetitive texts…

Data Structures and Algorithms · Computer Science 2020-12-17 Travis Gagie , Gonzalo Navarro , Nicola Prezza

The circular dictionary matching problem is an extension of the classical dictionary matching problem where every string in the dictionary is interpreted as a circular string: after reading the last character of a string, we can move back…

Data Structures and Algorithms · Computer Science 2025-04-07 Nicola Cotumaccio

This work introduces a companion reproducible paper with the aim of allowing the exact replication of the methods, experiments, and results discussed in a previous work [5]. In that parent paper, we proposed many and varied techniques for…

Data Structures and Algorithms · Computer Science 2019-12-30 Antonio Fariña , Miguel A. Martínez-Prieto , Francisco Claude , Gonzalo Navarro , Juan J. Lastra-Díaz , Nicola Prezza , Diego Seco

We are presenting a set of multilingual text analysis tools that can help analysts in any field to explore large document collections quickly in order to determine whether the documents contain information of interest, and to find the…

Computation and Language · Computer Science 2007-05-23 Camelia Ignat , Bruno Pouliquen , Ralf Steinberger , Tomaz Erjavec

In a \emph{weighted sequence}, for every position of the sequence and every letter of the alphabet a probability of occurrence of this letter at this position is specified. Weighted sequences are commonly used to represent imprecise or…

Data Structures and Algorithms · Computer Science 2017-08-28 Carl Barton , Tomasz Kociumaka , Chang Liu , Solon P. Pissis , Jakub Radoszewski

The compact directed acyclic word graph (CDAWG) of a string $T$ of length $n$ takes space proportional just to the number $e$ of right extensions of the maximal repeats of $T$, and it is thus an appealing index for highly repetitive…

Data Structures and Algorithms · Computer Science 2017-09-27 Djamal Belazzougui , Fabio Cunial

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. In the last two…

Information Retrieval · Computer Science 2012-10-01 Simone Faro , M. Oguzhan Külekci

Understanding and extracting of information from large documents, such as business opportunities, academic articles, medical documents and technical reports, poses challenges not present in short documents. Such large documents may be…

Computation and Language · Computer Science 2019-10-10 Muhammad Mahbubur Rahman , Tim Finin

We introduce a data structure for counting pattern occurrences in texts compressed with any run-length context-free grammar. Our structure uses space proportional to the grammar size and counts the occurrences of a pattern of length $m$ in…

Data Structures and Algorithms · Computer Science 2025-01-30 Gonzalo Navarro , Alejandro Pacheco