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Predicting phenotype from genotype is a central challenge in genetics. Traditional approaches in quantitative genetics typically analyze this problem using methods based on linear regression. These methods generally assume that the genetic…

Genomics · Quantitative Biology 2025-04-15 Krishna Rijal , Caroline M. Holmes , Samantha Petti , Gautam Reddy , Michael M. Desai , Pankaj Mehta

Ensembles of decision trees perform well on many problems, but are not interpretable. In contrast to existing approaches in interpretability that focus on explaining relationships between features and predictions, we propose an alternative…

Machine Learning · Statistics 2020-08-26 Sarah Tan , Matvey Soloviev , Giles Hooker , Martin T. Wells

Attention is a state of arousal capable of dealing with limited processing bottlenecks in human beings by focusing selectively on one piece of information while ignoring other perceptible information. For decades, concepts and functions of…

Machine Learning · Computer Science 2021-12-14 Alana Santana , Esther Colombini

Training deep neural networks from scratch on natural language processing (NLP) tasks requires significant amount of manually labeled text corpus and substantial time to converge, which usually cannot be satisfied by the customers. In this…

Computation and Language · Computer Science 2019-10-29 Yunzhe Tao , Saurabh Gupta , Satyapriya Krishna , Xiong Zhou , Orchid Majumder , Vineet Khare

Parameter-efficient fine-tuning (PEFT) has shown its effectiveness in adapting the pre-trained language models to downstream tasks while only updating a small number of parameters. Despite the success, most existing methods independently…

Computation and Language · Computer Science 2023-11-14 Hao Zhao , Jie Fu , Zhaofeng He

Commonsense reasoning is a pivotal skill for large language models, yet it presents persistent challenges in specific tasks requiring this competence. Traditional fine-tuning approaches can be resource-intensive and potentially compromise a…

Computation and Language · Computer Science 2023-09-26 Chenin Li , Qianglong Chen , Yin Zhang , Yifei Zhang , Hongxiang Yao

Attention mechanisms have improved the performance of NLP tasks while allowing models to remain explainable. Self-attention is currently widely used, however interpretability is difficult due to the numerous attention distributions. Recent…

Computation and Language · Computer Science 2020-10-30 Khalil Mrini , Franck Dernoncourt , Quan Tran , Trung Bui , Walter Chang , Ndapa Nakashole

This work proposes an attention-based sequence-to-sequence model for handwritten word recognition and explores transfer learning for data-efficient training of HTR systems. To overcome training data scarcity, this work leverages models…

Computer Vision and Pattern Recognition · Computer Science 2022-09-13 Dmitrijs Kass , Ekta Vats

This paper aims to address few-shot segmentation. While existing prototype-based methods have achieved considerable success, they suffer from uncertainty and ambiguity caused by limited labeled examples. In this work, we propose attentional…

Computer Vision and Pattern Recognition · Computer Science 2023-05-31 Haoliang Sun , Xiankai Lu , Haochen Wang , Yilong Yin , Xiantong Zhen , Cees G. M. Snoek , Ling Shao

Modern medicine requires generalised approaches to the synthesis and integration of multimodal data, often at different biological scales, that can be applied to a variety of evidence structures, such as complex disease analyses and…

Quantitative Methods · Quantitative Biology 2019-11-11 Devin Taylor , Simeon Spasov , Pietro Liò

Attention mechanisms are ubiquitous components in neural architectures applied to natural language processing. In addition to yielding gains in predictive accuracy, attention weights are often claimed to confer interpretability, purportedly…

Computation and Language · Computer Science 2020-04-08 Danish Pruthi , Mansi Gupta , Bhuwan Dhingra , Graham Neubig , Zachary C. Lipton

This paper explores the use of Deep Learning methods for automatic estimation of quality of human translations. Automatic estimation can provide useful feedback for translation teaching, examination and quality control. Conventional methods…

Computation and Language · Computer Science 2020-03-16 Yu Yuan , Serge Sharoff

Deep neural networks have been shown to be very powerful methods for many supervised learning tasks. However, they can also easily overfit to training set biases, i.e., label noise and class imbalance. While both learning with noisy labels…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Tong Wei , Jiang-Xin Shi , Yu-Feng Li , Min-Ling Zhang

Deep learning models have achieved high performance in medical applications, however, their adoption in clinical practice is hindered due to their black-box nature. Self-explainable models, like prototype-based models, can be especially…

Computer Vision and Pattern Recognition · Computer Science 2024-07-22 Shreyasi Pathak , Jörg Schlötterer , Jeroen Veltman , Jeroen Geerdink , Maurice van Keulen , Christin Seifert

Deep learning methods are powerful tools in classifying multivariate time series data. Despite their high performance, these methods are hard to interpret, which diminishes their applications in high-risk domains such as healthcare. In this…

Machine Learning · Computer Science 2026-05-11 Bhavesh Kalisetti , Vincent Wang , Gaurav R. Ghosal , Maryam Bijanzadeh , Reza Abbasi-Asl

Current machine learning models have shown high efficiency in solving a wide variety of real-world problems. However, their black box character poses a major challenge for the understanding and traceability of the underlying decision-making…

Machine Learning · Computer Science 2021-08-30 Srishti Gautam , Marina M. -C. Höhne , Stine Hansen , Robert Jenssen , Michael Kampffmeyer

While interpretable prototype networks offer compelling case-based reasoning for clinical diagnostics, their raw continuous outputs lack the semantic structure required for medical documentation. Bridging this gap via standard…

Computer Vision and Pattern Recognition · Computer Science 2026-05-29 Alvaro Lopez Pellicer , Plamen Angelov , Marwan Bukhari , Yi Li , Eduardo Soares , Jemma Kerns

Although attention mechanisms have been applied to a variety of deep learning models and have been shown to improve the prediction performance, it has been reported to be vulnerable to perturbations to the mechanism. To overcome the…

Computation and Language · Computer Science 2022-11-23 Shunsuke Kitada , Hitoshi Iyatomi

In-context learning with attention enables large neural networks to make context-specific predictions by selectively focusing on relevant examples. Here, we adapt this idea to supervised learning procedures such as lasso regression and…

Machine Learning · Statistics 2025-12-11 Erin Craig , Robert Tibshirani

Neural Machine Translation (NMT) models have shown remarkable performance but remain largely opaque in their decision making processes. The interpretability of these models, especially their internal attention mechanisms, is critical for…

Artificial Intelligence · Computer Science 2024-12-30 Anurag Mishra