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Abstracts derived from biomedical literature possess distinct domain-specific characteristics, including specialised writing styles and biomedical terminologies, which necessitate a deep understanding of the related literature. As a result,…

Computation and Language · Computer Science 2023-10-25 Chen Tang , Shun Wang , Tomas Goldsack , Chenghua Lin

Document screening is a central task within Evidenced Based Medicine, which is a clinical discipline that supplements scientific proof to back medical decisions. Given the recent advances in DL (Deep Learning) methods applied to Information…

Information Retrieval · Computer Science 2021-04-20 Alexandros Ioannidis

Multi-label text classification (MLC) is a challenging task in settings of large label sets, where label support follows a Zipfian distribution. In this paper, we address this problem through retrieval augmentation, aiming to improve the…

Computation and Language · Computer Science 2023-05-23 Ilias Chalkidis , Yova Kementchedjhieva

Here we study the semantic search and retrieval problem in biomedical digital libraries. First, we introduce MedGraph, a knowledge graph embedding-based method that provides semantic relevance retrieval and ranking for the biomedical…

Information Retrieval · Computer Science 2021-12-15 Islam Akef Ebeid , Elizabeth Pierce

The World Economic Forum (WEF) publishes annual reports on global risks which have the high impact on the world's economy. Currently, many researchers analyze the modeling and evolution of risks. However, few studies focus on validation of…

Social and Information Networks · Computer Science 2019-10-29 Xiang Niu , Gyorgy Korniss , Boleslaw K. Szymanski

A Pathology report is arguably one of the most important documents in medicine containing interpretive information about the visual findings from the patient's biopsy sample. Each pathology report has a retention period of up to 20 years…

Computation and Language · Computer Science 2019-03-19 Shivam Kalra , Larry Li , Hamid R. Tizhoosh

Twitter updates now represent an enormous stream of information originating from a wide variety of formal and informal sources, much of which is relevant to real-world events. In this paper we adapt existing bio-surveillance algorithms to…

Social and Information Networks · Computer Science 2015-04-10 Nicholas Thapen , Donal Simmie , Chris Hankin

Machine learning methods have recently achieved high-performance in biomedical text analysis. However, a major bottleneck in the widespread application of these methods is obtaining the required large amounts of annotated training data,…

Machine Learning · Computer Science 2019-12-06 Xing Meng , Craig H. Ganoe , Ryan T. Sieberg , Yvonne Y. Cheung , Saeed Hassanpour

Among the pressing issues facing Australian and other First Nations peoples is the repatriation of the bodily remains of their ancestors, which are currently held in Western scientific institutions. The success of securing the return of…

Computation and Language · Computer Science 2023-03-28 Md Abul Bashar , Richi Nayak , Gareth Knapman , Paul Turnbull , Cressida Fforde

Semantic annotations have to satisfy quality constraints to be useful for digital libraries, which is particularly challenging on large and diverse datasets. Confidence scores of multi-label classification methods typically refer only to…

Information Retrieval · Computer Science 2018-06-08 Martin Toepfer , Christin Seifert

We present a new Convolutional Neural Network (CNN) model for text classification that jointly exploits labels on documents and their component sentences. Specifically, we consider scenarios in which annotators explicitly mark sentences (or…

Computation and Language · Computer Science 2016-09-27 Ye Zhang , Iain Marshall , Byron C. Wallace

The number of scientific papers has increased rapidly in recent years. How to make good use of scientific papers for research is very important. Through the high-quality classification of scientific papers, researchers can quickly find the…

Information Retrieval · Computer Science 2022-10-10 Jiashun Liu , Zhe Xue , Ang Li

Automatically extracting useful information from electronic medical records along with conducting disease diagnoses is a promising task for both clinical decision support(CDS) and neural language processing(NLP). Most of the existing…

Computation and Language · Computer Science 2018-04-24 Zhongliang Yang , Yongfeng Huang , Yiran Jiang , Yuxi Sun , Yu-Jin Zhan , Pengcheng Luo

Text summarization in medicine can help doctors for reducing the time to access important information from countless documents. The paper offers a supervised extractive summarization method based on conditional generative adversarial…

Computation and Language · Computer Science 2021-10-25 Seyed Vahid Moravvej , Abdolreza Mirzaei , Mehran Safayani

Large Language Models (LLMs) have swiftly emerged as vital resources for different applications in the biomedical and healthcare domains; however, these models encounter issues such as generating inaccurate information or hallucinations.…

Computation and Language · Computer Science 2024-05-06 Mingchen Li , Halil Kilicoglu , Hua Xu , Rui Zhang

Document coherence describes how much sense text makes in terms of its logical organisation and discourse flow. Even though coherence is a relatively difficult notion to quantify precisely, it can be approximated automatically. This type of…

Information Retrieval · Computer Science 2016-08-03 Christina Lioma , Fabien Tarissan , Jakob Grue Simonsen , Casper Petersen , Birger Larsen

Twitter has been a prominent social media platform for mining population-level health data and accurate clustering of health-related tweets into topics is important for extracting relevant health insights. In this work, we propose deep…

Computation and Language · Computer Science 2019-01-03 Oguzhan Gencoglu

Document retrieval has taken its role in almost all domains of knowledge understanding, including the legal domain. Precedent refers to a court decision that is considered as authority for deciding subsequent cases involving identical or…

Information Retrieval · Computer Science 2021-07-20 Shivangi Bithel , Sumitra S Malagi

This master thesis describes an algorithm for automated categorization of scientific documents using deep learning techniques and compares the results to the results of existing classification algorithms. As an additional goal a reusable…

Information Retrieval · Computer Science 2017-06-20 Thomas Krause

Automating information extraction from form-like documents at scale is a pressing need due to its potential impact on automating business workflows across many industries like financial services, insurance, and healthcare. The key challenge…

Machine Learning · Computer Science 2022-01-14 Beliz Gunel , Navneet Potti , Sandeep Tata , James B. Wendt , Marc Najork , Jing Xie