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Motivation: Cellular Electron CryoTomography (CECT) enables 3D visualization of cellular organization at near-native state and in sub-molecular resolution, making it a powerful tool for analyzing structures of macromolecular complexes and…

Quantitative Methods · Quantitative Biology 2017-04-14 Min Xu , Xiaoqi Chai , Hariank Muthakana , Xiaodan Liang , Ge Yang , Tzviya Zeev-Ben-Mordehai , Eric Xing

The joint optimization of the reconstruction and classification error is a hard non convex problem, especially when a non linear mapping is utilized. In order to overcome this obstacle, a novel optimization strategy is proposed, in which a…

Machine Learning · Computer Science 2022-11-07 Ioannis A. Nellas , Sotiris K. Tasoulis , Vassilis P. Plagianakos , Spiros V. Georgakopoulos

Deep learning (DL) has revolutionized many fields such as materials design and protein folding. Recent studies have demonstrated the advantages of DL in the inverse design of structural colors, by effectively learning the complex nonlinear…

Optics · Physics 2026-05-22 Sichao Shan , Han Ye , Zhengmei Yang , Junpeng Hou , Zhitong Li

Many phenomena in physics, including light, water waves, and sound, are described by wave equations. Given their coefficients, wave equations can be solved to high accuracy, but the presence of the wavelength scale often leads to large…

Computational Physics · Physics 2025-02-19 Timo Gahlmann , Philippe Tassin

Based on its great successes in inference and denosing tasks, Dictionary Learning (DL) and its related sparse optimization formulations have garnered a lot of research interest. While most solutions have focused on single layer…

Machine Learning · Computer Science 2021-04-22 Wen Tang , Emilie Chouzenoux , Jean-Christophe Pesquet , Hamid Krim

In this paper, we propose a data-driven deep learning (DL) approach to jointly design the pilot signals and channel estimator for wideband massive multiple-input multiple-output (MIMO) systems. By exploiting the angular-domain…

Information Theory · Computer Science 2020-03-13 Xisuo Ma , Zhen Gao

Cryo-electron microscopy (cryo-EM) has become a major experimental technique to determine the structures of large protein complexes and molecular assemblies, as evidenced by the 2017 Nobel Prize. Although cryo-EM has been drastically…

Biomolecules · Quantitative Biology 2021-06-01 Dong Si , Andrew Nakamura , Runbang Tang , Haowen Guan , Jie Hou , Ammaar Firozi , Renzhi Cao , Kyle Hippe , Minglei Zhao

In this paper, we propose a domain-decomposition-based deep learning (DL) framework, named transient-CoMLSim, for accurately modeling unsteady and nonlinear partial differential equations (PDEs). The framework consists of two key…

Machine Learning · Computer Science 2025-02-21 Sheel Nidhan , Haoliang Jiang , Lalit Ghule , Clancy Umphrey , Rishikesh Ranade , Jay Pathak

Electroencephalogram (EEG) decoding aims to identify the perceptual, semantic, and cognitive content of neural processing based on non-invasively measured brain activity. Traditional EEG decoding methods have achieved moderate success when…

Signal Processing · Electrical Eng. & Systems 2022-03-09 Xun Chen , Chang Li , Aiping Liu , Martin J. McKeown , Ruobing Qian , Z. Jane Wang

Nanophotonic devices manipulate light at sub-wavelength scales, enabling tasks such as light concentration, routing, and filtering. Designing these devices is a challenging task. Traditionally, solving this problem has relied on…

Deep learning methods have played a more and more important role in hyperspectral image classification. However, the general deep learning methods mainly take advantage of the information of sample itself or the pairwise information between…

Computer Vision and Pattern Recognition · Computer Science 2021-03-30 Zhiqiang Gong , Weidong Hu , Xiaoyong Du , Ping Zhong , Panhe Hu

Traditional mathematical models used in designing next-generation communication systems often fall short due to inherent simplifications, narrow scope, and computational limitations. In recent years, the incorporation of deep learning (DL)…

Signal Processing · Electrical Eng. & Systems 2025-07-14 Omar Alnaseri , Laith Alzubaidi , Yassine Himeur , Mohammed Alaa Ala'anzy , Jens Timmermann , Mohammed S. M. Gismalla

Manifold learning (ML) aims to seek low-dimensional embedding from high-dimensional data. The problem is challenging on real-world datasets, especially with under-sampling data, and we find that previous methods perform poorly in this case.…

Machine Learning · Computer Science 2022-07-27 Zelin Zang , Siyuan Li , Di Wu , Ge Wang , Lei Shang , Baigui Sun , Hao Li , Stan Z. Li

The revolution in materials in the past century was built on a knowledge of the atomic arrangements and the structure-property relationship. The sine qua non for obtaining quantitative structural information is single crystal…

Computational Physics · Physics 2023-12-27 Gabe Guo , Judah Goldfeder , Ling Lan , Aniv Ray , Albert Hanming Yang , Boyuan Chen , Simon JL Billinge , Hod Lipson

Geophysical inversion attempts to estimate the distribution of physical properties in the Earth's interior from observations collected at or above the surface. Inverse problems are commonly posed as least-squares optimization problems in…

Geophysics · Physics 2019-05-22 Vladimir Puzyrev

The scientific computation of large deformations in elastic-plastic solids is crucial in various manufacturing applications. Traditional numerical methods exhibit several inherent limitations, prompting Deep Learning (DL) as a promising…

Artificial Intelligence · Computer Science 2026-01-16 Jianheng Tang , Shilong Tao , Zhe Feng , Haonan Sun , Menglu Wang , Zhanxing Zhu , Yunhuai Liu

Reducing dimensionality is a key preprocessing step in many data analysis applications to address the negative effects of the curse of dimensionality and collinearity on model performance and computational complexity, to denoise the data or…

Machine Learning · Computer Science 2023-03-07 Federico Zocco , Seán McLoone

Accurately identifying different representations of the same real-world entity is an integral part of data cleaning and many methods have been proposed to accomplish it. The challenges of this entity resolution task that demand so much…

Machine Learning · Computer Science 2021-06-02 Alex Bogatu , Norman W. Paton , Mark Douthwaite , Stuart Davie , Andre Freitas

In this paper, we develop a deep learning (DL)-guided hybrid beam and power allocation approach for multiuser millimeter-wave (mmWave) networks, which facilitates swift beamforming at the base station (BS). The following persisting…

Signal Processing · Electrical Eng. & Systems 2023-05-24 Yuwen Cao , Tomoaki Ohtsuki , Setareh Maghsudi , Tony Q. S. Quek

We consider a model-agnostic solution to the problem of Multi-Domain Learning (MDL) for multi-modal applications. Many existing MDL techniques are model-dependent solutions which explicitly require nontrivial architectural changes to…

Computer Vision and Pattern Recognition · Computer Science 2021-03-01 Anthony Sicilia , Xingchen Zhao , Davneet Minhas , Erin O'Connor , Howard Aizenstein , William Klunk , Dana Tudorascu , Seong Jae Hwang