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Learning representations that capture the underlying data generating process is a key problem for data efficient and robust use of neural networks. One key property for robustness which the learned representation should capture and which…

Machine Learning · Computer Science 2022-06-24 Mathieu Chevalley , Charlotte Bunne , Andreas Krause , Stefan Bauer

An iterative method is derived for image reconstruction. Among other attributes, this method allows constraints unrelated to the radiation measurements to be incorporated into the reconstructed image. A comparison is made with the widely…

Computational Physics · Physics 2011-01-06 Clinton DeW. Van Siclen

We propose a reinforcement-learning algorithm to tackle the challenge of reconstructing phylogenetic trees. The search for the tree that best describes the data is algorithmically challenging, thus all current algorithms for phylogeny…

Populations and Evolution · Quantitative Biology 2023-03-14 Dana Azouri , Oz Granit , Michael Alburquerque , Yishay Mansour , Tal Pupko , Itay Mayrose

We show that a reddening sequence exists for any quiver which is Banff. Our proof is combinatorial and relies on the triangular extension construction for quivers. The other facts needed are that the existence of a reddening sequence is…

Commutative Algebra · Mathematics 2020-06-09 Eric Bucher , John Machacek

We describe an algorithm for computing the maximal invariant set for a Markov chain with linear safety constraints on the distribution over states. We then propose a Markov chain synthesis method that guarantees finite determination of the…

Optimization and Control · Mathematics 2019-05-06 Dylan Janak , Behçet Açıkmeşe

Conservation laws are of great theoretical and practical interest. We describe a novel approach to machine learning conservation laws of finite-dimensional dynamical systems using trajectory data. It is the first such approach based on…

Computational Physics · Physics 2024-06-03 Meskerem Abebaw Mebratie , Rüdiger Nather , Guido Falk von Rudorff , Werner M. Seiler

This paper introduces the quantum deep sets model, expanding the quantum machine learning tool-box by enabling the possibility of learning variadic functions using quantum systems. A couple of variants are presented for this model. The…

Quantum Physics · Physics 2025-06-13 Vladimir Vargas-Calderón

We propose a novel formulation for parametric finite element methods to simulate surface diffusion of closed curves, which is also called as the curve diffusion. Several high-order temporal discretizations are proposed based on this new…

Numerical Analysis · Mathematics 2024-08-27 Harald Garcke , Wei Jiang , Chunmei Su , Ganghui Zhang

Given a list of behaviors and associated parameterized controllers for solving different individual tasks, we study the problem of selecting an optimal sequence of coordinated behaviors in multi-robot systems for completing a given mission,…

Robotics · Computer Science 2019-09-16 Pietro Pierpaoli , Thinh T. Doan , Justin Romberg , Magnus Egerstedt

In order to avoid disadvantages of monocropping for soil and environment, it is advisable to practice intercropping of various plant species whenever possible. However, intercropping is challenging as it requires a balanced planting…

Computers and Society · Computer Science 2021-12-21 Maurice Günder , Nico Piatkowski , Laura von Rueden , Rafet Sifa , Christian Bauckhage

Lorentz invariant structure-preserving algorithms possess reference-independent secular stability, which is vital for simulating relativistic multi-scale dynamical processes. The splitting method has been widely used to construct…

Plasma Physics · Physics 2021-06-02 Yulei Wang , Jian Liu , Yang He

Parameters of differential equations are essential to characterize intrinsic behaviors of dynamic systems. Numerous methods for estimating parameters in dynamic systems are computationally and/or statistically inadequate, especially for…

Methodology · Statistics 2026-01-27 Jianbin Tan , Guoyu Zhang , Xueqin Wang , Hui Huang , Fang Yao

Among the distance based algorithms in phylogenetic tree reconstruction, the neighbor-joining algorithm has been a widely used and effective method. We propose a new algorithm which counts the number of consistent quartets for cherry…

Populations and Evolution · Quantitative Biology 2023-10-31 Jin-Hwan Cho , Dosang Joe , Young Rock Kim

An extension to a recently introduced architecture of clique-based neural networks is presented. This extension makes it possible to store sequences with high efficiency. To obtain this property, network connections are provided with…

Neural and Evolutionary Computing · Computer Science 2014-09-02 Xiaoran Jiang , Vincent Gripon , Claude Berrou , Michael Rabbat

This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

Genomics · Quantitative Biology 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

We report a new coherent imaging technique, termed ptychographic structured modulation (PSM), for quantitative super-resolution microscopy. In this technique, we place a thin diffuser (i.e., a scattering lens) in between the sample and the…

Image and Video Processing · Electrical Eng. & Systems 2019-07-26 Pengming Song , Shaowei Jiang , He Zhang , Zichao Bian , Chengfei Guo , Kazunori Hoshino , Guoan Zheng

We consider the problem of how many components to retain in the application of principal component analysis when the dimension is much higher than the number of observations. To estimate the number of components, we propose to sequentially…

Methodology · Statistics 2018-06-29 Sungkyu Jung , Myung Hee Lee , Jeongyoun Ahn

Scientists aim to extract simplicity from observations of the complex world. An important component of this process is the exploration of data in search of trends. In practice, however, this tends to be more of an art than a science. Among…

Machine Learning · Computer Science 2021-08-11 Dalya Baron , Brice Ménard

Generating a novel and optimized molecule with desired chemical properties is an essential part of the drug discovery process. Failure to meet one of the required properties can frequently lead to failure in a clinical test which is costly.…

Machine Learning · Computer Science 2020-10-28 Bonggun Shin , Sungsoo Park , JinYeong Bak , Joyce C. Ho

To improve persistence diagram representation learning, we propose Multiset Transformer. This is the first neural network that utilizes attention mechanisms specifically designed for multisets as inputs and offers rigorous theoretical…

Machine Learning · Computer Science 2024-11-25 Minghua Wang , Ziyun Huang , Jinhui Xu