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The Gaussianity assumption has been consistently criticized as a main limitation of the Variational Autoencoder (VAE) despite its efficiency in computational modeling. In this paper, we propose a new approach that expands the model capacity…

Machine Learning · Statistics 2023-10-30 Seunghwan An , Jong-June Jeon

Recently, molecule generation using deep learning has been actively investigated in drug discovery. In this field, Transformer and VAE are widely used as powerful models, but they are rarely used in combination due to structural and…

Biomolecules · Quantitative Biology 2024-04-08 Yasuhiro Yoshikai , Tadahaya Mizuno , Shumpei Nemoto , Hiroyuki Kusuhara

This paper introduces a new interpretation of the Variational Autoencoder framework by taking a fully geometric point of view. We argue that vanilla VAE models unveil naturally a Riemannian structure in their latent space and that taking…

Machine Learning · Statistics 2022-11-04 Clément Chadebec , Stéphanie Allassonnière

Multi-label classification is the challenging task of predicting the presence and absence of multiple targets, involving representation learning and label correlation modeling. We propose a novel framework for multi-label classification,…

Machine Learning · Computer Science 2020-07-14 Junwen Bai , Shufeng Kong , Carla Gomes

As the appearance of medical images is influenced by multiple underlying factors, generative models require rich attribute information beyond labels to produce realistic and diverse images. For instance, generating an image of skin lesion…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Peng Huang , Junhu Fu , Bowen Guo , Zeju Li , Yuanyuan Wang , Yi Guo

We propose a variational autoencoder (VAE) approach for parameter estimation in nonlinear mixed-effects models based on ordinary differential equations (NLME-ODEs) using longitudinal data from multiple subjects. In moderate dimensions,…

Methodology · Statistics 2026-02-11 Zhe Li , Mélanie Prague , Rodolphe Thiébaut , Quentin Clairon

Federated Learning (FL) has gained popularity for fine-tuning large language models (LLMs) across multiple nodes, each with its own private data. While LoRA has been widely adopted for parameter efficient federated fine-tuning, recent…

Machine Learning · Computer Science 2025-03-11 Navyansh Mahla , Sunny Gupta , Amit Sethi

Multilayer neural networks set the current state of the art for many technical classification problems. But, these networks are still, essentially, black boxes in terms of analyzing them and predicting their performance. Here, we develop a…

Machine Learning · Computer Science 2023-07-21 Denis Kleyko , Antonello Rosato , E. Paxon Frady , Massimo Panella , Friedrich T. Sommer

Jointly identifying a mixture of discrete and continuous factors of variability without supervision is a key problem in unraveling complex phenomena. Variational inference has emerged as a promising method to learn interpretable mixture…

Machine Learning · Computer Science 2021-04-14 Yeganeh M. Marghi , Rohan Gala , Uygar Sümbül

Deep compositional models of meaning acting on distributional representations of words in order to produce vectors of larger text constituents are evolving to a popular area of NLP research. We detail a compositional distributional…

Computation and Language · Computer Science 2015-08-14 Jianpeng Cheng , Dimitri Kartsaklis

This work explores the visual explanation for deep metric learning and its applications. As an important problem for learning representation, metric learning has attracted much attention recently, while the interpretation of such model is…

Computer Vision and Pattern Recognition · Computer Science 2021-08-31 Sijie Zhu , Taojiannan Yang , Chen Chen

We introduce the variational graph auto-encoder (VGAE), a framework for unsupervised learning on graph-structured data based on the variational auto-encoder (VAE). This model makes use of latent variables and is capable of learning…

Machine Learning · Statistics 2016-11-23 Thomas N. Kipf , Max Welling

Stochastic binary hidden units in a multi-layer perceptron (MLP) network give at least three potential benefits when compared to deterministic MLP networks. (1) They allow to learn one-to-many type of mappings. (2) They can be used in…

Machine Learning · Statistics 2015-04-10 Tapani Raiko , Mathias Berglund , Guillaume Alain , Laurent Dinh

Despite the growing use of transformer models in computer vision, a mechanistic understanding of these networks is still needed. This work introduces a method to reverse-engineer Vision Transformers trained to solve image classification…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Martina G. Vilas , Timothy Schaumlöffel , Gemma Roig

Popular generative model learning methods such as Generative Adversarial Networks (GANs), and Variational Autoencoders (VAE) enforce the latent representation to follow simple distributions such as isotropic Gaussian. In this paper, we…

Machine Learning · Computer Science 2018-03-15 Cem Subakan , Oluwasanmi Koyejo , Paris Smaragdis

Designing machine learning architectures for processing neural networks in their raw weight matrix form is a newly introduced research direction. Unfortunately, the unique symmetry structure of deep weight spaces makes this design very…

Machine Learning · Computer Science 2023-06-02 Aviv Navon , Aviv Shamsian , Idan Achituve , Ethan Fetaya , Gal Chechik , Haggai Maron

Variational Autoencoders (VAEs), as a form of deep generative model, have been widely used in recent years, and shown great great peformance in a number of different domains, including image generation and anomaly detection, etc.. This…

Machine Learning · Computer Science 2024-08-28 Liang Cheng , Peiyuan Guan , Amir Taherkordi , Lei Liu , Dapeng Lan

Metamaterials are emerging as a new paradigmatic material system to render unprecedented and tailorable properties for a wide variety of engineering applications. However, the inverse design of metamaterial and its multiscale system is…

Computational Engineering, Finance, and Science · Computer Science 2020-09-17 Liwei Wang , Yu-Chin Chan , Faez Ahmed , Zhao Liu , Ping Zhu , Wei Chen

Masked Autoencoders (MAEs) achieve impressive performance in image classification tasks, yet the internal representations they learn remain less understood. This work started as an attempt to understand the strong downstream classification…

Machine Learning · Computer Science 2026-02-04 Anika Shrivastava , Renu Rameshan , Samar Agnihotri

In Hezaveh et al. 2017 we showed that deep learning can be used for model parameter estimation and trained convolutional neural networks to determine the parameters of strong gravitational lensing systems. Here we demonstrate a method for…

Cosmology and Nongalactic Astrophysics · Physics 2017-11-29 Laurence Perreault Levasseur , Yashar D. Hezaveh , Risa H. Wechsler