English
Related papers

Related papers: GeNet: Deep Representations for Metagenomics

200 papers

Automated service classification plays a crucial role in service discovery, selection, and composition. Machine learning has been widely used for service classification in recent years. However, the performance of conventional machine…

Machine Learning · Computer Science 2020-12-25 Yilong Yang , Nafees Qamar , Peng Liu , Katarina Grolinger , Weiru Wang , Zhi Li , Zhifang Liao

In recent years, deep neural networks have achieved great success in the field of computer vision. However, it is still a big challenge to deploy these deep models on resource-constrained embedded devices such as mobile robots, smart phones…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Yiming Hu , Siyang Sun , Jianquan Li , Xingang Wang , Qingyi Gu

Retentive Network (RetNet) represents a significant advancement in neural network architecture, offering an efficient alternative to the Transformer. While Transformers rely on self-attention to model dependencies, they suffer from high…

Computation and Language · Computer Science 2025-06-10 Haiqi Yang , Zhiyuan Li , Yi Chang , Yuan Wu

Convolutional Neural Networks (CNNs) has revolutionized computer vision, but training very deep networks has been challenging due to the vanishing gradient problem. This paper explores Residual Networks (ResNet), introduced by He et al.…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Xingyu Liu , Kun Ming Goh

Designing the structure of neural networks is considered one of the most challenging tasks in deep learning, especially when there is few prior knowledge about the task domain. In this paper, we propose an Ecologically-Inspired GENetic…

Neural and Evolutionary Computing · Computer Science 2019-04-16 Jian Ren , Zhe Li , Jianchao Yang , Ning Xu , Tianbao Yang , David J. Foran

Recent results indicate that the generic descriptors extracted from the convolutional neural networks are very powerful. This paper adds to the mounting evidence that this is indeed the case. We report on a series of experiments conducted…

Computer Vision and Pattern Recognition · Computer Science 2014-05-13 Ali Sharif Razavian , Hossein Azizpour , Josephine Sullivan , Stefan Carlsson

In practical application, the performance of recognition network usually decreases when being applied on super-resolution images. In this paper, we propose a feature-based recognition network combined with GAN (FGAN). Our network improves…

Computer Vision and Pattern Recognition · Computer Science 2021-12-07 Jing Hu , Meiqi Zhang , Rui Zhang

While a key component to the success of deep learning is the availability of massive amounts of training data, medical image datasets are often limited in diversity and size. Transfer learning has the potential to bridge the gap between…

Computer Vision and Pattern Recognition · Computer Science 2023-12-06 Dovile Juodelyte , Amelia Jiménez-Sánchez , Veronika Cheplygina

Deep learning Convolutional Neural Network (CNN) models are powerful classification models but require a large amount of training data. In niche domains such as bird acoustics, it is expensive and difficult to obtain a large number of…

Computer Vision and Pattern Recognition · Computer Science 2019-09-18 Dina B. Efremova , Mangalam Sankupellay , Dmitry A. Konovalov

The success of deep neural networks (DNN) in machine perception applications such as image classification and speech recognition comes at the cost of high computation and storage complexity. Inference of uncompressed large scale DNN models…

Machine Learning · Computer Science 2020-07-06 Yihao Fang , Shervin Manzuri Shalmani , Rong Zheng

Sequence classification has a wide range of real-world applications in different domains, such as genome classification in health and anomaly detection in business. However, the lack of explicit features in sequence data makes it difficult…

Machine Learning · Computer Science 2023-06-19 Khaled Mohammed Saifuddin , Corey May , Farhan Tanvir , Muhammad Ifte Khairul Islam , Esra Akbas

This paper presents a deep learning approach for the classification of Engineering (CAD) models using Convolutional Neural Networks (CNNs). Owing to the availability of large annotated datasets and also enough computational power in the…

Computer Vision and Pattern Recognition · Computer Science 2021-07-15 Bharadwaj Manda , Pranjal Bhaskare , Ramanathan Muthuganapathy

Traditional change detection methods usually follow the image differencing, change feature extraction and classification framework, and their performance is limited by such simple image domain differencing and also the hand-crafted…

Computer Vision and Pattern Recognition · Computer Science 2020-03-17 Bin Hou , Qingjie Liu , Heng Wang , Yunhong Wang

Metagenomics is a powerful approach to study genetic content of environmental samples that has been strongly promoted by NGS technologies. To cope with massive data involved in modern metagenomic projects, recent tools [4, 39] rely on the…

Genomics · Quantitative Biology 2016-03-17 Karel Brinda , Maciej Sykulski , Gregory Kucherov

Learning with kernels is an important concept in machine learning. Standard approaches for kernel methods often use predefined kernels that require careful selection of hyperparameters. To mitigate this burden, we propose in this paper a…

Machine Learning · Computer Science 2020-06-26 Yufan Zhou , Changyou Chen , Jinhui Xu

Recently, very deep convolutional neural networks (CNNs) have shown outstanding performance in object recognition and have also been the first choice for dense classification problems such as semantic segmentation. However, repeated…

Computer Vision and Pattern Recognition · Computer Science 2016-11-28 Guosheng Lin , Anton Milan , Chunhua Shen , Ian Reid

We describe a deep learning approach for automated brain hemorrhage detection from computed tomography (CT) scans. Our model emulates the procedure followed by radiologists to analyse a 3D CT scan in real-world. Similar to radiologists, the…

Computer Vision and Pattern Recognition · Computer Science 2018-01-04 Monika Grewal , Muktabh Mayank Srivastava , Pulkit Kumar , Srikrishna Varadarajan

Deep neural networks have been widely used in computer vision. There are several well trained deep neural networks for the ImageNet classification challenge, which has played a significant role in image recognition. However, little work has…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Youshan Zhang , Brian D. Davison

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Deep hashing techniques have emerged as the predominant approach for efficient image retrieval. Traditionally, these methods utilize pre-trained convolutional neural networks (CNNs) such as AlexNet and VGG-16 as feature extractors. However,…

Computer Vision and Pattern Recognition · Computer Science 2024-03-21 Aymene Berriche , Mehdi Adjal Zakaria , Riyadh Baghdadi