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An evolutionary tree (phylogenetic tree) is a binary, rooted, unordered tree that models the evolutionary history of currently living species in which leaves are labeled by species. In this paper, we investigate the problem of finding the…

Populations and Evolution · Quantitative Biology 2013-04-02 Soheil Jahangiri Tazehkand , Seyed Naser Hashemi , Hadi Poormohammadi

Let $s$ be a finite sequence over a field of length $n$. It is well-known that if $s$ satisfies a linear recurrence of order $d$ with non-zero constant term, then the reverse of $s$ also satisfies a recurrence of order $d$ (with…

Information Theory · Computer Science 2010-07-26 Graham H. Norton

In this paper we consider the time and the crossing sequence complexities of one-tape off-line Turing machines. We show that the running time of each nondeterministic machine accepting a nonregular language must grow at least as n\log n, in…

Formal Languages and Automata Theory · Computer Science 2009-05-11 Giovanni Pighizzini

Let $M_n$ be the minimal position at generation $n$, of a real-valued branching random walk in the boundary case. As $n \to \infty$, $M_n- {3 \over 2} \log n$ is tight (see [1][9][2]). We establish here a law of iterated logarithm for the…

Probability · Mathematics 2017-07-06 Yueyun Hu

For a simple (unbiased) random walk on a connected graph with $n$ vertices, the cover time (the expected number of steps it takes to visit all vertices) is at most $O(n^3)$. We consider locally biased random walks, in which the probability…

Probability · Mathematics 2016-07-19 Roee David , Uriel Feige

The (axis-parallel) stabbing number of a given set of line segments is the maximum number of segments that can be intersected by any one (axis-parallel) line. This paper deals with finding perfect matchings, spanning trees, or…

Computational Geometry · Computer Science 2008-09-05 Sandor P. Fekete , Marco Luebbecke , Henk Meijer

A decision tree recursively splits a feature space $\mathbb{R}^{d}$ and then assigns class labels based on the resulting partition. Decision trees have been part of the basic machine-learning toolkit for decades. A large body of work treats…

Given a graph of which the n vertices form a regular two-dimensional grid, and in which each (possibly weighted and/or directed) edge connects a vertex to one of its eight neighbours, the following can be done in O(scan(n)) I/Os, provided M…

Data Structures and Algorithms · Computer Science 2012-11-12 Herman Haverkort

Given a sequence of integers, we want to find a longest increasing subsequence of the sequence. It is known that this problem can be solved in $O(n \log n)$ time and space. Our goal in this paper is to reduce the space consumption while…

Data Structures and Algorithms · Computer Science 2017-12-27 Masashi Kiyomi , Hirotaka Ono , Yota Otachi , Pascal Schweitzer , Jun Tarui

For a text given in advance, the substring minimal suffix queries ask to determine the lexicographically minimal non-empty suffix of a substring specified by the location of its occurrence in the text. We develop a data structure answering…

Data Structures and Algorithms · Computer Science 2016-02-01 Tomasz Kociumaka

Given a word $w$ and a Parikh vector $\mathcal{P}$, an abelian run of period $\mathcal{P}$ in $w$ is a maximal occurrence of a substring of $w$ having abelian period $\mathcal{P}$. We give an algorithm that finds all the abelian runs of…

Formal Languages and Automata Theory · Computer Science 2015-01-08 Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Élise Prieur-Gaston

New bounds on the number of similar or directly similar copies of a pattern within a finite subset of the line or the plane are proved. The number of equilateral triangles whose vertices all lie within an $n$-point subset of the plane is…

Combinatorics · Mathematics 2016-11-22 Bernardo Abrego , Silvia Fernandez-Merchant , Daniel J. Katz , Levon Kolesnikov

We consider directed graphs where each edge is labeled with an integer weight and study the fundamental algorithmic question of computing the value of a cycle with minimum mean weight. Our contributions are twofold: (1) First we show that…

Data Structures and Algorithms · Computer Science 2013-07-18 Krishnendu Chatterjee , Monika Henzinger , Sebastian Krinninger , Veronika Loitzenbauer

Polytrees are a subclass of Bayesian networks that seek to capture the conditional dependencies between a set of $n$ variables as a directed forest and are motivated by their more efficient inference and improved interpretability. Since the…

Data Structures and Algorithms · Computer Science 2026-05-06 Juha Harviainen , Frank Sommer , Manuel Sorge

Tries are popular data structures for storing a set of strings, where common prefixes are represented by common root-to-node paths. Over fifty years of usage have produced many variants and implementations to overcome some of their…

Data Structures and Algorithms · Computer Science 2011-12-06 Roberto Grossi , Giuseppe Ottaviano

In this paper, we are interested in the number of red nodes in red-black trees. We first present an $O(n^2\log n)$ time dynamic programming solution for computing $r(n)$, the largest number of red internal nodes in a red-black tree on $n$…

Data Structures and Algorithms · Computer Science 2014-06-13 Yingjie Wu , Daxin Zhu , Lei Wang , Xiaodong Wang

The linear complexity of a sequence $s$ is one of the measures of its predictability. It represents the smallest degree of a linear recursion which the sequence satisfies. There are several algorithms to find the linear complexity of a…

Cryptography and Security · Computer Science 2019-12-30 Yeow Meng Chee , Johan Chrisnata , Tuvi Etzion , Han Mao Kiah

We establish nearly optimal upper and lower bounds for approximating decision tree splits in data streams. For regression with labels in the range $\{0,1,\ldots,M\}$, we give a one-pass algorithm using $\tilde{O}(M^2/\epsilon)$ space that…

Data Structures and Algorithms · Computer Science 2026-04-23 Hoang Ta , Hoa T. Vu

Let $P$ be a path graph of $n$ vertices embedded in a metric space. We consider the problem of adding a new edge to $P$ to minimize the radius of the resulting graph. Previously, a similar problem for minimizing the diameter of the graph…

Data Structures and Algorithms · Computer Science 2019-04-30 Christopher Johnson , Haitao Wang

We consider the problem of approximate counting of triangles and longer fixed length cycles in directed graphs. For triangles, T\v{e}tek [ICALP'22] gave an algorithm that returns a $(1 \pm \eps)$-approximation in…

Data Structures and Algorithms · Computer Science 2024-10-01 Keren Censor-Hillel , Tomer Even , Virginia Vassilevska Williams
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