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Mapper, a topological algorithm, is frequently used as an exploratory tool to build a graphical representation of data. This representation can help to gain a better understanding of the intrinsic shape of high-dimensional genomic data and…

Genomics · Quantitative Biology 2023-07-19 Erik J. Amézquita , Farzana Nasrin , Kathleen M. Storey , Masato Yoshizawa

We introduce the R package \CRANpkg{SIHR} for statistical inference in high-dimensional generalized linear models with continuous and binary outcomes. The package provides functionalities for constructing confidence intervals and performing…

Computation · Statistics 2023-05-03 Prabrisha Rakshit , Zhenyu Wang , T. Tony Cai , Zijian Guo

Software comprehension can be extremely time-consuming due to the ever-growing size of codebases. Consequently, there is an increasing need to accelerate the code comprehension process to facilitate maintenance and reduce associated costs.…

Software Engineering · Computer Science 2024-01-15 Krzysztof Borowski , Bartosz Baliś , Tomasz Orzechowski

This paper introduces pyRecLab, a software library written in C++ with Python bindings which allows to quickly train, test and develop recommender systems. Although there are several software libraries for this purpose, only a few let…

Software Engineering · Computer Science 2017-07-12 Gabriel Sepulveda , Vicente Dominguez , Denis Parra

In the following paper, we have combined the various basic functionalities provided by the NumPy library and OpenCv library, which is an open source for Computer Vision applications, like conversion of colored images to grayscale,…

Computer Vision and Pattern Recognition · Computer Science 2021-07-09 Ayushe Gangal , Peeyush Kumar , Sunita Kumari

Simulated high-dimensional data is useful for testing, validating, and improving algorithms used in dimension reduction, supervised and unsupervised learning. High-dimensional data is characterized by multiple variables that are dependent…

Course-based Undergraduate Research Experiences (CUREs) bring the excitement of research into the classroom to improve learning and the sense of belonging in the field. They can reach more students, earlier in their studies, than typical…

Physics Education · Physics 2024-09-04 David A. Strubbe

Localizing desired objects from remote sensing images is of great use in practical applications. Referring image segmentation, which aims at segmenting out the objects to which a given expression refers, has been extensively studied in…

Computer Vision and Pattern Recognition · Computer Science 2024-03-05 Zhenghang Yuan , Lichao Mou , Yuansheng Hua , Xiao Xiang Zhu

Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerful…

Quantitative Methods · Quantitative Biology 2025-11-17 Paul Jonas Jost , Frank T Bergmann , Daniel Weindl , Jan Hasenauer

Gaussian process (GP) models are commonly used statistical metamodels for emulating expensive computer simulators. Fitting a GP model can be numerically unstable if any pair of design points in the input space are close together. Ranjan,…

Computation · Statistics 2015-11-20 Blake MacDonald , Pritam Ranjan , Hugh Chipman

Understanding decision-making in clinical environments is of paramount importance if we are to bring the strengths of machine learning to ultimately improve patient outcomes. Several factors including the availability of public data, the…

Machine Learning · Computer Science 2022-03-15 Alex J. Chan , Ioana Bica , Alihan Huyuk , Daniel Jarrett , Mihaela van der Schaar

Vision-Language Models (VLMs) are increasingly used in document processing pipelines to convert flowchart images into structured code (e.g., Mermaid). In production, these systems process arbitrary inputs for which no ground-truth code…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Giang Son Nguyen , Zi Pong Lim , Sarthak Ketanbhai Modi , Yon Shin Teo , Wenya Wang

arcjetCV is an open-source Python software designed to automate time-resolved measurements of heatshield material recession and recession rates from arcjet test video footage. This new automated and accessible capability greatly exceeds…

Computer Vision and Pattern Recognition · Computer Science 2024-04-18 Alexandre Quintart , Magnus Haw , Federico Semeraro

Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various…

Large Language Models (LLMs) have demonstrated impressive capabilities in a wide range of code generation tasks. However, generating code for certain domains remains challenging. One such domain is Computer-Aided Design (CAD) program, where…

Machine Learning · Computer Science 2026-03-10 Yan-Ying Chen , Dule Shu , Matthew Hong , Andrew Taber , Jonathan Li , Matthew Klenk

Conversational recommender systems (CRS) enhance user experience through multi-turn interactions, yet evaluating CRS remains challenging. User simulators can provide comprehensive evaluations through interactions with CRS, but building…

Human-Computer Interaction · Computer Science 2025-08-01 Luyu Chen , Quanyu Dai , Zeyu Zhang , Xueyang Feng , Mingyu Zhang , Pengcheng Tang , Xu Chen , Yue Zhu , Zhenhua Dong

Sequential Recommender Systems (SRSs) have emerged as a highly efficient approach to recommendation systems. By leveraging sequential data, SRSs can identify temporal patterns in user behaviour, significantly improving recommendation…

The unpaired point cloud completion task aims to complete a partial point cloud by using models trained with no ground truth. Existing unpaired point cloud completion methods are class-aware, i.e., a separate model is needed for each object…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Yixuan Yang , Jinyu Yang , Zixiang Zhao , Victor Sanchez , Feng Zheng

It is critical to accurately simulate data when employing Monte Carlo techniques and evaluating statistical methodology. Measurements are often correlated and high dimensional in this era of big data, such as data obtained in…

Simulation studies are computer experiments that involve creating data by pseudorandom sampling. The key strength of simulation studies is the ability to understand the behaviour of statistical methods because some 'truth' (usually some…

Methodology · Statistics 2019-01-18 Tim P Morris , Ian R White , Michael J Crowther
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