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In this paper we first describe the class of log-Gaussian Cox processes (LGCPs) as models for spatial and spatio-temporal point process data. We discuss inference, with a particular focus on the computational challenges of likelihood-based…

Methodology · Statistics 2013-12-24 Peter J. Diggle , Paula Moraga , Barry Rowlingson , Benjamin M. Taylor

This paper introduces an R package for spatio-temporal prediction and forecasting for log-Gaussian Cox processes. The main computational tool for these models is Markov chain Monte Carlo and the new package, lgcp, therefore also provides an…

Computation · Statistics 2011-10-28 Benjamin M. Taylor , Tilman M. Davies , Barry S. Rowlingson , Peter J. Diggle

The R package rts2 provides data manipulation and model fitting tools for Log Gaussian Cox Process (LGCP) models. LGCP models are a key method for disease and other types of surveillance, and provide a means of predicting risk across an…

Computation · Statistics 2024-03-15 Samuel I Watson

The log-Gaussian Cox process (LGCP) is a popular point process for modeling non-interacting spatial point patterns. This paper extends the LGCP model to handle data exhibiting fundamentally different behaviors in different subregions of the…

Methodology · Statistics 2017-11-03 Anders Hildeman , David Bolin , Jonas Wallin , Janine B. Illian

Hawkes processes are point process models that have been used to capture self-excitatory behavior in social interactions, neural activity, earthquakes and viral epidemics. They can model the occurrence of the times and locations of events.…

Machine Learning · Statistics 2022-10-24 Xenia Miscouridou , Samir Bhatt , George Mohler , Seth Flaxman , Swapnil Mishra

The main goal of disease mapping is to estimate disease risk and identify high-risk areas. Such analyses are hampered by the limited geographical resolution of the available data. Typically the available data are counts per spatial unit and…

Applications · Statistics 2019-12-02 Garyfallos Konstantinoudis , Dominic Schuhmacher , Håvard Rue , Ben Spycher

Although ambulance call data typically come in the form of spatio-temporal point patterns, point process-based modelling approaches presented in the literature are scarce. In this paper, we study a unique set of Swedish spatio-temporal…

Applications · Statistics 2020-09-15 Fekadu L. Bayisa , Markus Ådahl , Patrik Rydén , Ottmar Cronie

It is common in nature to see aggregation of objects in space. Exploring the mechanism associated with the locations of such clustered observations can be essential to understanding the phenomenon, such as the source of spatial…

The log-Gaussian Cox process is a flexible and popular class of point pattern models for capturing spatial and space-time dependence for point patterns. Model fitting requires approximation of stochastic integrals which is implemented…

Computation · Statistics 2018-10-24 Shinichiro Shirota , Sudipto Banerjee

In geostatistics, the design for data collection is central for accurate prediction and parameter inference. One important class of geostatistical models is log-Gaussian Cox process (LGCP) which is used extensively, for example, in ecology.…

Methodology · Statistics 2021-11-08 Jia Liu , Jarno Vanhatalo

We generalize the log Gaussian Cox process (LGCP) framework to model multiple correlated point data jointly. The observations are treated as realizations of multiple LGCPs, whose log intensities are given by linear combinations of latent…

Machine Learning · Statistics 2019-03-18 Virginia Aglietti , Theodoros Damoulas , Edwin Bonilla

The Log-Gaussian Cox Process is a commonly used model for the analysis of spatial point patterns. Fitting this model is difficult because of its doubly-stochastic property, i.e., it is an hierarchical combination of a Poisson process at the…

Computation · Statistics 2017-01-05 Ming Teng , Farouk S. Nathoo , Timothy D. Johnson

For point patterns observed in natura, spatial heterogeneity is more the rule than the exception. In numerous applications, this can be mathematically handled by the flexible class of log Gaussian Cox processes (LGCPs); in brief, a LGCP is…

Statistics Theory · Mathematics 2019-10-10 Jiří Dvořák , Jesper Møller , Tomáš Mrkvička , Samuel Soubeyrand

We analyze a decade of aerial survey whale sighting data (2010-2019) to model the spatio-temporal distributions and group sizes of beluga (Delphinapterus leucas) and bowhead (Balaena mysticetus) whales in the United States Arctic. To…

Applications · Statistics 2025-12-09 Mauli Pant , Linda Fernandez , Indranil Sahoo

The modeling of spatial point processes has advanced considerably, yet extending these models to non-Euclidean domains, such as road networks, remains a challenging problem. We propose a novel framework for log-Gaussian Cox processes on…

Methodology · Statistics 2025-01-31 David Bolin , Damilya Saduakhas , Alexandre B. Simas

A log Gaussian Cox process (LGCP) is a doubly stochastic construction consisting of a Poisson point process with a random log-intensity given by a Gaussian random field. Statistical methodology have mainly been developed for LGCPs defined…

Statistics Theory · Mathematics 2018-05-08 Jesper Møller , Francisco Cuevas-Pacheco

We present a novel Bayesian spatial disaggregation model for count data, providing fast and flexible inference at high resolution. First, it incorporates non-linear covariate effects using penalized splines, a flexible approach that is not…

Methodology · Statistics 2026-04-13 Sara Rutten , Thomas Neyens , Elisa Duarte , Christel Faes

The log Gaussian Cox process is a flexible class of point pattern models for capturing spatial and spatio-temporal dependence for point patterns. Model fitting requires approximation of stochastic integrals which is implemented through…

Computation · Statistics 2016-12-04 Shinichiro Shirota , Alan E. Gelfand

Stochastic gradient Markov chain Monte Carlo (SGMCMC) has become a popular method for scalable Bayesian inference. These methods are based on sampling a discrete-time approximation to a continuous time process, such as the Langevin…

Computation · Statistics 2018-10-29 Jack Baker , Paul Fearnhead , Emily B Fox , Christopher Nemeth

A spatial curve dynamical model framework is adopted for functional prediction of counts in a spatiotemporal log-Gaussian Cox process model. Our spatial functional estimation approach handles both wavelet-based heterogeneity analysis in…

Methodology · Statistics 2020-10-09 Torres-Signes , M. P. Frías , J. Mateu , M. D. Ruiz-Medina
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