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Autoencoders are powerful machine learning models used to compress information from multiple data sources. However, autoencoders, like all artificial neural networks, are often unidentifiable and uninterpretable. This research focuses on…

DNA language models are increasingly used to represent genomic sequence, yet their effectiveness depends critically on how raw nucleotides are converted into model inputs. Unlike natural language, DNA offers no canonical boundaries, making…

Genomics · Quantitative Biology 2026-05-21 Taewon Kim , Jihwan Shin , Hyomin Kim , Youngmok Jung , Jonghoon Lee , Won-Chul Lee , Sungsoo Ahn , Insu Han

In order to monitor the state of large-scale infrastructures, image acquisition by autonomous flight drones is efficient for stable angle and high-quality images. Supervised learning requires a large data set consisting of images and…

Image and Video Processing · Electrical Eng. & Systems 2020-11-17 Takato Yasuno , Akira Ishii , Junichiro Fujii , Masazumi Amakata , Yuta Takahashi

A fundamental task in data exploration is to extract simplified low dimensional representations that capture intrinsic geometry in data, especially for faithfully visualizing data in two or three dimensions. Common approaches to this task…

Machine Learning · Statistics 2021-07-30 Andrés F. Duque , Sacha Morin , Guy Wolf , Kevin R. Moon

Radio detection of air showers produced by ultra-high energy cosmic rays is a cost-effective technique for the next generation of sparse arrays. The performance of this technique strongly depends on the environmental background, which has…

We present a new self-supervised paradigm on point cloud sequence understanding. Inspired by the discriminative and generative self-supervised methods, we design two tasks, namely point cloud sequence based Contrastive Prediction and…

Computer Vision and Pattern Recognition · Computer Science 2023-05-23 Xiaoxiao Sheng , Zhiqiang Shen , Gang Xiao

Due to the limited availability of anomalous samples for training, video anomaly detection is commonly viewed as a one-class classification problem. Many prevalent methods investigate the reconstruction difference produced by AutoEncoders…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Xiangyu Huang , Caidan Zhao , Chenxing Gao , Lvdong Chen , Zhiqiang Wu

We focus on a specific use case in anomaly detection where the distribution of normal samples is supported by a lower-dimensional manifold. Here, regularized autoencoders provide a popular approach by learning the identity mapping on the…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 Alexander Bauer , Shinichi Nakajima , Klaus-Robert Müller

In quantised autoencoders, images are usually split into local patches, each encoded by one token. This representation is redundant in the sense that the same number of tokens is spend per region, regardless of the visual information…

Computer Vision and Pattern Recognition · Computer Science 2024-08-06 Tim Elsner , Paula Usinger , Victor Czech , Gregor Kobsik , Yanjiang He , Isaak Lim , Leif Kobbelt

Reconstruction-based methods play an important role in unsupervised anomaly detection in images. Ideally, we expect a perfect reconstruction for normal samples and poor reconstruction for abnormal samples. Since the generalizability of deep…

Computer Vision and Pattern Recognition · Computer Science 2021-07-29 Jinlei Hou , Yingying Zhang , Qiaoyong Zhong , Di Xie , Shiliang Pu , Hong Zhou

The design of novel proteins has many applications but remains an attritional process with success in isolated cases. Meanwhile, deep learning technologies have exploded in popularity in recent years and are increasingly applicable to…

Biomolecules · Quantitative Biology 2018-11-07 Joe G Greener , Lewis Moffat , David T Jones

Autoencoders have been extensively used in the development of recent anomaly detection techniques. The premise of their application is based on the notion that after training the autoencoder on normal training data, anomalous inputs will…

Machine Learning · Computer Science 2024-03-29 Amin Ghafourian , Huanyi Shui , Devesh Upadhyay , Rajesh Gupta , Dimitar Filev , Iman Soltani Bozchalooi

We use autoencoders to create low-dimensional embeddings of underlying patient phenotypes that we hypothesize are a governing factor in determining how different patients will react to different interventions. We compare the performance of…

Machine Learning · Computer Science 2017-03-22 Harini Suresh , Peter Szolovits , Marzyeh Ghassemi

Facial attributes can provide rich ancillary information which can be utilized for different applications such as targeted marketing, human computer interaction, and law enforcement. This research focuses on facial attribute prediction…

Computer Vision and Pattern Recognition · Computer Science 2018-03-21 Akshay Sethi , Maneet Singh , Richa Singh , Mayank Vatsa

Research in the past years introduced Steered Mixture-of-Experts (SMoE) as a framework to form sparse, edge-aware models for 2D- and higher dimensional pixel data, applicable to compression, denoising, and beyond, and capable to compete…

Image and Video Processing · Electrical Eng. & Systems 2023-05-08 Elvira Fleig , Erik Bochinski , Thomas Sikora

We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space. Differentiating species from genomic sequences (i.e., DNA…

Genomics · Quantitative Biology 2024-10-23 Zhihan Zhou , Weimin Wu , Harrison Ho , Jiayi Wang , Lizhen Shi , Ramana V Davuluri , Zhong Wang , Han Liu

Recent works in domain adaptation always learn domain invariant features to mitigate the gap between the source and target domains by adversarial methods. The category information are not sufficiently used which causes the learned domain…

Computer Vision and Pattern Recognition · Computer Science 2020-05-29 Lihua Zhou , Mao Ye , Xinpeng Li , Ce Zhu , Yiguang Liu , Xue Li

Autoencoders have been widely used for dimensional reduction and feature extraction. Various types of autoencoders have been proposed by introducing regularization terms. Most of these regularizations improve representation learning by…

Machine Learning · Computer Science 2020-06-26 Yuzhu Guo , Kang Pan , Simeng Li , Zongchang Han , Kexin Wang , Li Li

The analysis of deforming 3D surface meshes is accelerated by autoencoders since the low-dimensional embeddings can be used to visualize underlying dynamics. But, state-of-the-art mesh convolutional autoencoders require a fixed connectivity…

Computer Vision and Pattern Recognition · Computer Science 2021-10-22 Sara Hahner , Jochen Garcke

Deep neural network is an effective choice to automatically recognize human actions utilizing data from various wearable sensors. These networks automate the process of feature extraction relying completely on data. However, various noises…

Signal Processing · Electrical Eng. & Systems 2021-01-05 Tanvir Mahmud , A. Q. M. Sazzad Sayyed , Shaikh Anowarul Fattah , Sun-Yuan Kung