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One basic requirement of many studies is the necessity of classifying data. Clustering is a proposed method for summarizing networks. Clustering methods can be divided into two categories named model-based approaches and algorithmic…

Machine Learning · Computer Science 2013-02-19 Raheleh Namayandeh , Farzad Didehvar , Zahra Shojaei

High-throughput computational materials design promises to greatly accelerate the process of discovering new materials and compounds, and of optimizing their properties. The large databases of structures and properties that result from…

Chemical Physics · Physics 2016-11-22 Sandip De , Felix Musil , Teresa Ingram , Carsten Baldauf , Michele Ceriotti

We introduce a new self-consistent structure finding algorithm that parses large scale cosmological structure into clusters, filaments and voids. This structure finding algorithm probes the cosmological structure at multiple scales and…

Cosmology and Nongalactic Astrophysics · Physics 2016-05-04 Ali Snedden , Lara Arielle Phillips , Grant J. Mathews , Jared Coughlin , In-Saeng Suh , Aparna Bhattacharya

Finding neighbourhood structures is very useful in extracting valuable relationships among data samples. This paper presents a survey of recent neighbourhood construction algorithms for pattern clustering and classifying data points.…

Data Structures and Algorithms · Computer Science 2018-10-09 Shahin Pourbahrami , Leyli Mohammad Khanli

We propose a model-based clustering algorithm for a general class of functional data for which the components could be curves or images. The random functional data realizations could be measured with error at discrete, and possibly random,…

Machine Learning · Statistics 2022-03-14 Steven Golovkine , Nicolas Klutchnikoff , Valentin Patilea

Many standard structural quantities, such as order parameters and correlation functions, exist for common condensed matter systems, such as spherical and rod-like particles. However, these structural quantities are often insufficient for…

Soft Condensed Matter · Physics 2012-01-18 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

Clustering is an effective technique in data mining to generate groups that are the matter of interest. Among various clustering approaches, the family of k-means algorithms and min-cut algorithms gain most popularity due to their…

Machine Learning · Computer Science 2014-11-25 Xiaojun Chang , Feiping Nie , Zhigang Ma , Yi Yang

Graph clustering is the problem of identifying sparsely connected dense subgraphs (clusters) in a given graph. Proposed clustering algorithms usually optimize various fitness functions that measure the quality of a cluster within the graph.…

Computational Complexity · Computer Science 2007-05-23 Jiri Sima , Satu Elisa Schaeffer

In this paper, we present a cluster algorithm for the numerical simulations of non-additive hard-core mixtures. This algorithm allows one to simulate and equilibrate systems with a number of particles two orders of magnitude larger than…

Soft Condensed Matter · Physics 2009-11-10 Arnaud Buhot

Clustering can be defined as the process of assembling objects into a number of groups whose elements are similar to each other in some manner. As a technique that is used in many domains, such as face clustering, plant categorization,…

Machine Learning · Computer Science 2022-04-05 Mehmet F. Demirel , Enrico Au-Yeung

The thermodynamics and kinetics of crystallization of nanoparticles, as opposed to bulk phases, may be influenced by surface and size effects. We investigate the importance of such factors in the crystallization process of gold, silver, and…

Statistical Mechanics · Physics 2024-07-09 Arthur France-Lanord , Sarath Menon , Julien Lam

In an age of increasingly large data sets, investigators in many different disciplines have turned to clustering as a tool for data analysis and exploration. Existing clustering methods, however, typically depend on several nontrivial…

Quantitative Methods · Quantitative Biology 2009-11-11 Noam Slonim , Gurinder Singh Atwal , Gasper Tkacik , William Bialek

This paper presents a comprehensive analysis of simple models useful to analyze the growth of nanostructures obtained by cluster deposition. After detailing the potential interest of nanostructures, I extensively study the first stages of…

Materials Science · Physics 2015-06-25 Pablo Jensen

Micro-panel data are collected and analysed in many research and industry areas. Cluster analysis of micro-panel data is an unsupervised learning exploratory method identifying subgroup clusters in a data set which include homogeneous…

Machine Learning · Statistics 2018-07-17 Lukas Sobisek , Maria Stachova , Jan Fojtik

Bayesian model-based clustering is a widely applied procedure for discovering groups of related observations in a dataset. These approaches use Bayesian mixture models, estimated with MCMC, which provide posterior samples of the model…

Methodology · Statistics 2018-09-24 Ketong Wang , Michael D. Porter

In this paper we propose a framework inspired by interacting particle physics and devised to perform clustering on multidimensional datasets. To this end, any given dataset is modeled as an interacting particle system, under the assumption…

Statistical Mechanics · Physics 2012-07-26 Giuliano Armano , Marco Alberto Javarone

The structure of defect clusters formed in a displacement cascade plays a significant role in the micro-structural evolution during irradiation. Molecular dynamics simulations have been widely used to study collision cascades and subsequent…

Computational Physics · Physics 2024-02-02 Utkarsh Bhardwaj , Andrea E. Sand , Manoj Warrier

Subspace clustering refers to the task of finding a multi-subspace representation that best fits a collection of points taken from a high-dimensional space. This paper introduces an algorithm inspired by sparse subspace clustering (SSC) [In…

Machine Learning · Computer Science 2014-05-26 Mahdi Soltanolkotabi , Ehsan Elhamifar , Emmanuel J. Candès

The aim of this paper is to give a short review on cluster dynamics modeling in the field of atoms and point defects clustering in materials. It is shown that this method, due to its low computer cost, can handle long term evolution that…

Materials Science · Physics 2007-09-13 Alain Barbu , Emmanuel Clouet

Meme clustering is critical for toxicity detection, virality modeling, and typing, but it has received little attention in previous research. Clustering similar Internet memes is challenging due to their multimodality, cultural context, and…

Computation and Language · Computer Science 2025-05-05 Tygo Bloem , Filip Ilievski