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Artificial Intelligence (AI) has long pursued models, theories, and techniques to imbue machines with human-like general intelligence. Yet even the currently predominant data-driven approaches in AI seem to be lacking humans' unique ability…
'Tree-based' phylogenetic networks proposed by Francis and Steel have attracted much attention of theoretical biologists in the last few years. At the heart of the definitions of tree-based phylogenetic networks is the notion of 'support…
Given an underlying undirected simple graph, we consider the set of all acyclic orientations of its edges. Each of these orientations induces a partial order on the vertices of our graph and, therefore, we can count the number of linear…
The diameter distribution of a given species of deciduous trees in mature, temperate zone forests is well approximated by a Gamma distribution. Here we give new experimental evidence for this conjecture by analyzing deciduous tree size data…
We count the number of vertices in plane trees and $k$-ary trees with given outdegree, and prove that the total number of vertices of outdegree $i$ over all plane trees with $n$ edges is ${2n-i-1 \choose n-1}$, and the total number of…
Geometry of networks endowed with a causal structure is discussed using the conventional framework of equilibrium statistical mechanics. The popular growing network models appear as particular causal models. We focus on a class of tree…
The problem of spanning trees is closely related to various interesting problems in the area of statistical physics, but determining the number of spanning trees in general networks is computationally intractable. In this paper, we perform…
A weighted recursive tree is an evolving tree in which vertices are assigned random vertex-weights and new vertices connect to a predecessor with a probability proportional to its weight. Here, we study the maximum degree and near-maximum…
We study the crossing-minimization problem in a layered graph drawing of planar-embedded rooted trees whose leaves have a given total order on the first layer, which adheres to the embedding of each individual tree. The task is then to…
We propose a new arithmetic for non-empty rooted unordered trees simply called trees. After discussing tree representation and enumeration, we define the operations of tree addition, multiplication and stretch, prove their properties, and…
By weighted tree we understand such connected tree,that: a) each its vertex and each edge have a positive integer weight; b) the weight of each vertex is equal to the sum of weights of outgoing edges. Each tree has a binary structure --- we…
We use the theory of \Gamma-species to enumerate k-gonal and polygonal 2-trees with respect to their vertices. We then extend this result to enumerate "succulents", a tree-like class of graphs which generalize cacti.
We study the enumeration problem for different kind of tree parking functions introduced recently, called tree parking functions, tree parking distributions, prime tree parking functions, and prime tree parking distributions, for rooted…
In weighted trees, all edges are endowed with positive integral weight. We enumerate weighted bicolored plane trees according to their weight and number of edges.
Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…
We give the first data structure for the problem of maintaining a dynamic set of n elements drawn from a partially ordered universe described by a tree. We define the Line-Leaf Tree, a linear-sized data structure that supports the…
We construct generating trees with one, two, and three labels for some classes of permutations avoiding generalized patterns of length 3 and 4. These trees are built by adding at each level an entry to the right end of the permutation,…
Let $T$ be an $n$-node tree of maximum degree 4, and let $P$ be a set of $n$ points in the plane with no two points on the same horizontal or vertical line. It is an open question whether $T$ always has a planar drawing on $P$ such that…
To solve a linear program, the simplex method follows a path in the graph of a polytope, on which a linear function increases. The length of this path is an key measure of the complexity of the simplex method. Numerous previous articles…
The purpose of this paper is to analyze certain statistics of a recently introduced non-uniform random tree model, biased recursive trees. This model is based on constructing a random tree by establishing a correspondence with non-uniform…