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Nanotube patterning may occur naturally upon the spontaneous self-assembly of biomolecules onto the surface of single-walled carbon nanotubes (SWNTs). It results in periodically alternating bands of surface properties, ranging from…

Biological Physics · Physics 2012-02-13 Sergey Pogodin , Nigel K. H. Slater , Vladimir A. Baulin

Fungal Biosynthetic Gene Clusters (BGCs) of secondary metabolites are clusters of genes capable of producing natural products, compounds that play an important role in the production of a wide variety of bioactive compounds, including…

Genomics · Quantitative Biology 2020-03-31 Hayda Almeida , Adrian Tsang , Abdoulaye Baniré Diallo

We have performed a density functional theory study of the possible layered geometries occurring after dehydrogenation of a self-assembled monolayer (SAM) of biphenyl-thiol molecules (BPTs) adsorbed on a Au(111), as it has been…

Mesoscale and Nanoscale Physics · Physics 2011-11-10 Pepa Cabrera-Sanfelix , Andrés Arnau , Daniel Sánchez-Portal

Advances in nanotechnology lead to an increasing interest in how nanoparticles interact with biomembranes. Nanoparticles are wrapped spontaneously by biomembranes if the adhesive interactions between the particles and membranes compensate…

Subcellular Processes · Quantitative Biology 2016-09-16 Michael Raatz , Thomas R. Weikl

We demonstrate the application of graphene as a support for imaging individual biological molecules in transmission electron microscope (TEM). A simple procedure to produce free-standing graphene membranes has been designed. Such membranes…

Biological systems excel at building spatial structures on scales ranging from nanometers to kilometers and exhibit temporal patterning from milliseconds to years. One approach that nature has taken to accomplish this relies on the…

Cell Behavior · Quantitative Biology 2009-11-10 Herbert Levine , Eshel Ben-Jacob

The influence of an external magnetic field upon the capture of 130 nm magnetic nanoparticles (MNPs) by ferromagnetic nanostructures was investigated. The magnetophoretic forces acting upon a nanoparticle were simulated in external magnetic…

Mesoscale and Nanoscale Physics · Physics 2023-08-25 Reyne Dowling , Mikhail Kostylev

Plants rarely occur in isolated systems. Bacteria can inhabit either the endosphere, the region inside the plant root, or the rhizosphere, the soil region just outside the plant root. Our goal is to understand if using genomic data and…

Genomics · Quantitative Biology 2017-01-13 Jennifer Chien , Peter Larsen

We propose a mechanism for mechanical regulation at the membrane of living cells, based on the exchange of membrane area between the cell membrane and a membrane reservoir. The reservoir is composed of invaginated membrane microdomains…

Subcellular Processes · Quantitative Biology 2007-05-23 Pierre Sens , Matthew S. Turner

Tandem mass spectrometry (MS/MS) is a high-throughput technology used toidentify the proteins in a complex biological sample, such as a drop of blood. A collection of spectra is generated at the output of the process, each spectrum of which…

Quantitative Methods · Quantitative Biology 2019-09-06 John T. Halloran , David M. Rocke

Living organisms produce metabolites of many types via their metabolisms. Especially, flavonoids, a kind of secondary metabolites, of plant species are interesting examples. Since plant species are believed to have specific flavonoids with…

Populations and Evolution · Quantitative Biology 2015-03-19 Kazuhiro Takemoto

We demonstrate the fabrication of sharp nanopillars of high aspect ratio onto specialized atomic force microscopy (AFM) microcantilevers and their use for high-speed AFM of DNA and nucleoproteins in liquid. The fabrication technique uses…

Biomolecules · Quantitative Biology 2023-11-07 Frances I. Allen , José María De Teresa , Bibiana Onoa

Mechanical forces such as fluid shear have been shown to enhance cell growth and differentiation, but knowledge of their mechanistic effect on cells is limited because the local flow patterns and associated metrics are not precisely known.…

Compared with classical process-based models, the functional-structural plant models provide more efficient tools to explore the impact of changes in plant structures on plant functioning. In this paper we investigated the effects of…

Dynamical Systems · Mathematics 2010-12-16 Dong Li , Véronique Letort , Yan Guo , P. De Reffye , Zhigang Zhan

Substrate engineering for steering cell growth is a wide and well-established area of research in the field of modern biotechnology. Here we introduce a micromachining technique to pattern an inert, transparent polymer matrix blended with a…

Branched molecules of deoxyribonucleic acid (DNA) can self-assemble into nanostructures through complementary cohesive strand base pairing. The production of DNA nanostructures is valuable in targeted drug delivery and biomolecular…

Combinatorics · Mathematics 2022-03-15 D. Chloe Griffin , Jessica Sorrells

The elaboration of multimodal nanoparticles stimulates tremendous interest owing to their numerous potentialities in many applicative fields like optoelectronics, photonics and especially bioimaging. The concomitant association of various…

Materials Science · Physics 2016-01-05 Jerome Fresnais , Elena Ishow , Olivier Sandre , Jean-Francois Berret

Epigenetics is a driving force of important and ubiquitous phenomena in nature such as cell differentiation or even metamorphosis. Oppositely to its widespread role, understanding the biophysical principles that allow epigenetics to control…

Soft Condensed Matter · Physics 2020-01-08 Davide Colì , Davide Michieletto , Davide Marenduzzo , Enzo Orlandini

The transcriptional regulation of gene expression is orchestrated by complex networks of interacting genes. Increasing evidence indicates that these transcriptional regulatory networks (TRNs) in bacteria have an inherently hierarchical…

Molecular Networks · Quantitative Biology 2014-05-16 Santhust Kumar , Michele Vendruscolo , Amit Singh , Dhiraj Kumar , Areejit Samal

In systems of active programmable matter, individual modules require a constant supply of energy to participate in the system's collective behavior. These systems are often powered by an external energy source accessible by at least one…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-21 Joshua J. Daymude , Andréa W. Richa , Jamison W. Weber