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Graphs are ubiquitous in encoding relational information of real-world objects in many domains. Graph generation, whose purpose is to generate new graphs from a distribution similar to the observed graphs, has received increasing attention…

Machine Learning · Computer Science 2022-12-08 Yanqiao Zhu , Yuanqi Du , Yinkai Wang , Yichen Xu , Jieyu Zhang , Qiang Liu , Shu Wu

Complex networks are frequently employed to model physical or virtual complex systems. When certain entities exist across multiple systems simultaneously, unveiling their corresponding relationships across the networks becomes crucial. This…

Physics and Society · Physics 2025-04-16 Rui Tang , Ziyun Yong , Shuyu Jiang , Xingshu Chen , Yaofang Liu , Yi-Cheng Zhang , Gui-Quan Sun , Wei Wang

In this article, we extend several algebraic graph analysis methods to bipartite networks. In various areas of science, engineering and commerce, many types of information can be represented as networks, and thus the discipline of network…

Discrete Mathematics · Computer Science 2015-01-16 Jérôme Kunegis

Hypergraphs require higher-dimensional representations, which makes it more difficult to compute and interpret their spectral properties. This survey article uses the framework of hypermatrices to give an in-depth overview of the spectral…

History and Overview · Mathematics 2025-07-21 Shashwath S Shetty , K Arathi Bhat

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

Graph neural networks (GNNs) are quickly becoming the standard approach for learning on graph structured data across several domains, but they lack transparency in their decision-making. Several perturbation-based approaches have been…

Machine Learning · Computer Science 2021-11-29 Anna Himmelhuber , Mitchell Joblin , Martin Ringsquandl , Thomas Runkler

The abundance of interconnected data has fueled the design and implementation of graph generators reproducing real-world linking properties, or gauging the effectiveness of graph algorithms, techniques and applications manipulating these…

Databases · Computer Science 2020-01-23 Angela Bonifati , Irena Holubová , Arnau Prat-Pérez , Sherif Sakr

Understanding the structure and dynamics of biological networks is one of the important challenges in system biology. In addition, increasing amount of experimental data in biological networks necessitate the use of efficient methods to…

Artificial Intelligence · Computer Science 2012-07-17 Mohammadreza Keyvanpour , Fereshteh Azizani

Graph randomization techniques play a crucial role in network analysis, allowing researchers to assess the statistical significance of observed network properties and distinguish meaningful patterns from random fluctuations. In this survey…

Physics and Society · Physics 2024-05-10 Bart De Clerck , Filip Van Utterbeeck , Luis E. C. Rocha

Graph learning is a popular approach for performing machine learning on graph-structured data. It has revolutionized the machine learning ability to model graph data to address downstream tasks. Its application is wide due to the…

Machine Learning · Computer Science 2022-11-07 Falih Gozi Febrinanto , Feng Xia , Kristen Moore , Chandra Thapa , Charu Aggarwal

Processing large complex networks recently attracted considerable interest. Complex graphs are useful in a wide range of applications from technological networks to biological systems like the human brain. Sometimes these networks are…

Data Structures and Algorithms · Computer Science 2019-12-03 Christian Schulz

This book collects the lectures about graph theory and its applications which were given to students of mathematical departments of Moscow State University and Peking University. Graph theory is a very wide field with a lot of applications…

Social and Information Networks · Computer Science 2024-10-15 Mikhail Tuzhilin , Dong Zhang

We introduce a new measure of complexity (called spectral complexity) for directed graphs. We start with splitting of the directed graph into its recurrent and non-recurrent parts. We define the spectral complexity metric in terms of the…

Spectral Theory · Mathematics 2018-11-02 Igor Mezić , Vladimir A. Fonoberov , Maria Fonoberova , Tuhin Sahai

Network theory has proven to be a powerful tool in describing and analyzing systems by modelling the relations between their constituent objects. In recent years great progress has been made by augmenting `traditional' network theory.…

Data Analysis, Statistics and Probability · Physics 2016-06-03 Dominik Traxl , Niklas Boers , Jürgen Kurths

These notes offer a unified introduction to spectral methods for the study of complex systems. They are intended as an operative manual rather than a theorem-proof textbook: the emphasis is on tools, identities, and perspectives that can be…

Statistical Mechanics · Physics 2025-09-10 Francesco Caravelli

In many ways, graphs are the main modality of data we receive from nature. This is due to the fact that most of the patterns we see, both in natural and artificial systems, are elegantly representable using the language of graph structures.…

Machine Learning · Computer Science 2023-09-06 Petar Veličković

Graph theory provides a primary tool for analyzing and designing computer communication networks. In the past few decades, Graph theory has been used to study various types of networks, including the Internet, wide Area Networks, Local Area…

Networking and Internet Architecture · Computer Science 2009-07-20 Kamal Ahmat

Graph theory has become a very critical component in many applications in the computing field including networking and security. Unfortunately, it is also amongst the most complex topics to understand and apply. In this paper, we review…

Cryptography and Security · Computer Science 2015-11-17 Jonathan Webb , Fernando Docemmilli , Mikhail Bonin

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

Graph neural networks (GNN) have shown outstanding applications in many fields where data is fundamentally represented as graphs (e.g., chemistry, biology, recommendation systems). In this vein, communication networks comprise many…