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The advent of plant phenomics, coupled with the wealth of genotypic data generated by next-generation sequencing technologies, provides exciting new resources for investigations into and improvement of complex traits. However, these new…

Genomics · Quantitative Biology 2019-04-30 Gota Morota , Diego Jarquin , Malachy T. Campbell , Hiroyoshi Iwata

Plant phenotyping (Guo et al. 2021; Pieruschka et al. 2019) focuses on studying the diverse traits of plants related to the plants' growth. To be more specific, by accurately measuring the plant's anatomical, ontogenetical, physiological…

Machine Learning · Computer Science 2022-01-17 Jun Wu , Elizabeth A. Ainsworth , Sheng Wang , Kaiyu Guan , Jingrui He

In light of growing challenges in agriculture with ever growing food demand across the world, efficient crop management techniques are necessary to increase crop yield. Precision agriculture techniques allow the stakeholders to make…

Computer Vision and Pattern Recognition · Computer Science 2020-06-23 Akshay L Chandra , Sai Vikas Desai , Wei Guo , Vineeth N Balasubramanian

Automated high throughput plant phenotyping involves leveraging sensors, such as RGB, thermal and hyperspectral cameras (among others), to make large scale and rapid measurements of the physical properties of plants for the purpose of…

Computer Vision and Pattern Recognition · Computer Science 2021-06-24 Chao Ren , Justin Dulay , Gregory Rolwes , Duke Pauli , Nadia Shakoor , Abby Stylianou

Accurate reconstruction of plant models for phenotyping analysis is critical for optimising sustainable agricultural practices in precision agriculture. Traditional laboratory-based phenotyping, while valuable, falls short of understanding…

Robotics · Computer Science 2024-02-16 Yaoqiang Pan , Kewei Hu , Tianhao Liu , Chao Chen , Hanwen Kang

Agriculture remains a cornerstone of global health and economic sustainability, yet labor-intensive tasks such as harvesting high-value crops continue to face growing workforce shortages. Robotic harvesting systems offer a promising…

Robotics · Computer Science 2026-05-13 Nur Afsa Syeda , Mohamed Elmahallawy , Luis Fernando de la Torre , John Miller

In order to apply the recent successes of machine learning and automated plant phenotyping on a large scale using agricultural robotics, efficient and general algorithms must be designed to intelligently split crop fields into small, yet…

Computer Vision and Pattern Recognition · Computer Science 2022-02-02 Henry J. Nelson , Nikolaos Papanikolopoulos

Quantifying organism-level phenotypes, such as growth dynamics and biomass accumulation, is fundamental to understanding agronomic traits and optimizing crop production. However, quality growing data of plants at scale is difficult to…

Quantitative Methods · Quantitative Biology 2025-07-10 Adam J Riesselman , Evan M Cofer , Therese LaRue , Wim Meeussen

With the need to feed a growing world population, the efficiency of crop production is of paramount importance. To support breeding and field management, various characteristics of the plant phenotype need to be measured -- a time-consuming…

High-throughput phenotyping refers to the non-destructive and efficient evaluation of plant phenotypes. In recent years, it has been coupled with machine learning in order to improve the process of phenotyping plants by increasing…

Computer Vision and Pattern Recognition · Computer Science 2024-07-11 Vivaan Singhvi , Langalibalele Lunga , Pragya Nidhi , Chris Keum , Varrun Prakash

Motivation: Recent advances in high-throughput sequencing (HTS) have made it possible to monitor genomes in great detail. New experiments not only use HTS to measure genomic features at one time point but to monitor them changing over time…

Populations and Evolution · Quantitative Biology 2014-09-19 Hande Topa , Ágnes Jónás , Robert Kofler , Carolin Kosiol , Antti Honkela

Plant phenotyping, that is, the quantitative assessment of plant traits including growth, morphology, physiology, and yield, is a critical aspect towards efficient and effective crop management. Currently, plant phenotyping is a manually…

Computer Vision and Pattern Recognition · Computer Science 2021-04-15 Annalisa Milella , Roberto Marani , Antonio Petitti , Giulio Reina

Despite the availability of ever more data enabled through modern sensor and computer technology, it still remains an open problem to learn dynamical systems in a sample-efficient way. We propose active learning strategies that leverage…

Machine Learning · Computer Science 2020-12-08 Mona Buisson-Fenet , Friedrich Solowjow , Sebastian Trimpe

The problem of learning the structure of a high dimensional graphical model from data has received considerable attention in recent years. In many applications such as sensor networks and proteomics it is often expensive to obtain samples…

Machine Learning · Statistics 2016-04-08 Gautam Dasarathy , Aarti Singh , Maria-Florina Balcan , Jong Hyuk Park

Artificial Intelligence (AI) has emerged as a key driver of precision agriculture, facilitating enhanced crop productivity, optimized resource use, farm sustainability, and informed decision-making. Also, the expansion of genome sequencing…

Genomics · Quantitative Biology 2024-07-25 Guanjin Wang , Junyu Xuan , Penghao Wang , Chengdao Li , Jie Lu

Post-genomic research deals with challenging problems in screening genomes of organisms for particular functions or potential for being the targets of genetic engineering for desirable biological features. 'Phenotyping' of wild type and…

Quantitative Methods · Quantitative Biology 2010-09-06 Hesam T. Dashti , Jernej Tonejc , Adel Ardalan , Alireza F. Siahpirani , Sabrina Guettes , Zohreh Sharif , Liya Wang , Amir H. Assadi

In the machine learning domain, active learning is an iterative data selection algorithm for maximizing information acquisition and improving model performance with limited training samples. It is very useful, especially for the industrial…

Machine Learning · Statistics 2020-04-24 Xiaowei Yue , Yuchen Wen , Jeffrey H. Hunt , Jianjun Shi

Bio-hybrid systems---close couplings of natural organisms with technology---are high potential and still underexplored. In existing work, robots have mostly influenced group behaviors of animals. We explore the possibilities of mixing…

Neural and Evolutionary Computing · Computer Science 2018-04-20 Mostafa Wahby , Mary Katherine Heinrich , Daniel Nicolas Hofstadler , Payam Zahadat , Sebastian Risi , Phil Ayres , Thomas Schmickl , Heiko Hamann

Plant phenotyping refers to a quantitative description of the plants properties, however in image-based phenotyping analysis, our focus is primarily on the plants anatomical, ontogenetical and physiological properties.This technique…

Computer Vision and Pattern Recognition · Computer Science 2022-10-25 Petros N. Tamvakis , Chairi Kiourt , Alexandra D. Solomou , George Ioannakis , Nestoras C. Tsirliganis

In agricultural automation, inherent occlusion presents a major challenge for robotic harvesting. We propose a novel imitation learning-based viewpoint planning approach to actively adjust camera viewpoint and capture unobstructed images of…

Robotics · Computer Science 2025-03-14 Lun Li , Hamidreza Kasaei
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