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A large family of linear codes with flexible parameters from almost bent functions and perfect nonlinear functions are constructed and their parameters are determined. Some constructed linear codes and their related codes are optimal in the…
Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and share this data with the research community, but some of these…
In this article we construct new minimal intersection sets in ${\mathrm{AG}}(r,q^2)$ sporting three intersection numbers with hyperplanes; we then use these sets to obtain linear error correcting codes with few weights, whose weight…
Many graph problems were first shown to be fixed-parameter tractable using the results of Robertson and Seymour on graph minors. We show that the combination of finite, computable, obstruction sets and efficient order tests is not just one…
We consider multi-label prediction problems with large output spaces under the assumption of output sparsity -- that the target (label) vectors have small support. We develop a general theory for a variant of the popular error correcting…
Upper bounds to the size of a family of subsets of an n-element set that avoids certain configurations are proved. These forbidden configurations can be described by inclusion patterns and some sets having the same size. Our results are…
In this paper we present a new problem, the fast set intersection problem, which is to preprocess a collection of sets in order to efficiently report the intersection of any two sets in the collection. In addition we suggest new solutions…
We generalize a well-known algorithm for the generation of all subsets of a set in lexicographic order with respect to the sets as lists of elements (subset-lex order). We obtain algorithms for various combinatorial objects such as the…
In this work, a graph partitioning problem in a fixed number of connected components is considered. Given an undirected graph with costs on the edges, the problem consists of partitioning the set of nodes into a fixed number of subsets with…
In nonadaptive group testing, the main research objective is to design an efficient algorithm to identify a set of up to $t$ positive elements among $n$ samples with as few tests as possible. Disjunct matrices and separable matrices are two…
Efficiently computing low discrepancy colorings of various set systems, has been studied extensively since the breakthrough work by Bansal (FOCS 2010), who gave the first polynomial time algorithms for several important settings, including…
We propose a new family of combinatorial inference problems for graphical models. Unlike classical statistical inference where the main interest is point estimation or parameter testing, combinatorial inference aims at testing the global…
Sequential Latin hypercube designs have recently received great attention for computer experiments. Much of the work has been restricted to invariant spaces. The related systematic construction methods are inflexible while algorithmic…
The problem of storing permutations in a distributed manner arises in several common scenarios, such as efficient updates of a large, encrypted, or compressed data set. This problem may be addressed in either a combinatorial or a coding…
We consider the problem of finding a low discrepancy coloring for sparse set systems where each element lies in at most $t$ sets. We give an algorithm that finds a coloring with discrepancy $O((t \log n \log s)^{1/2})$ where $s$ is the…
Algorithms for machine learning-guided design, or design algorithms, use machine learning-based predictions to propose novel objects with desired property values. Given a new design task -- for example, to design novel proteins with high…
We investigate the design challenges of constructing effective and efficient neural sequence labeling systems, by reproducing twelve neural sequence labeling models, which include most of the state-of-the-art structures, and conduct a…
Complex systems are fascinating because their rich macroscopic properties emerge from the interaction of many simple parts. Understanding the building principles of these emergent phenomena in nature requires assessing natural complex…
This paper examines the construction of low-density parity-check (LDPC) codes from transversal designs based on sets of mutually orthogonal Latin squares (MOLS). By transferring the concept of configurations in combinatorial designs to the…
Matching mechanisms play a central role in operations management across diverse fields including education, healthcare, and online platforms. However, experimentally comparing a new matching algorithm against a status quo presents some…