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Based on a coarse-grained model, we carry out molecular dynamics simulations to analyze the diffusion of a small tracer particle inside a cylindrical channel whose inner wall is covered with randomly grafted short polymeric chains. We…

Soft Condensed Matter · Physics 2013-06-20 Rajarshi Chakrabarti , Stefan Kesselheim , Peter Kosovan , Christian Holm

Being motivated by recent progress in nanopore sensing, we develop a theory of the effect of large analytes, or blockers, trapped within the nanopore confines, on diffusion flow of small solutes. The focus is on the nanopore diffusion…

Quantitative Methods · Quantitative Biology 2022-07-20 Leonardo Dagdug , Alexei T. Skvortsov , Alexander M. Berezhkovskii , Sergey M. Bezrukov

The diffusive transport of biased Brownian particles in a two-dimensional symmetric channel is investigated numerically considering both the no-flow and the reflection boundary conditions at the channel boundaries. Here, the geometrical…

Soft Condensed Matter · Physics 2019-09-10 Narender Khatri , P. S. Burada

Results of direct numerical simulations (DNS) of porous-wall turbulent flows in open channels with conjugate heat transfer are reported in this work. For the conductive porous walls considered here, the change in heat transfer is not…

Fluid Dynamics · Physics 2025-07-15 Seyed Morteza Habibi Khorasani , Geert Brethouwer , Shervin Bagheri

The movement of motor particles consisting of one or several molecular motors bound to a cargo particle is studied theoretically. The particles move on patterns of immobilized filaments. Several patterns are described for which the motor…

Statistical Mechanics · Physics 2009-11-11 Stefan Klumpp , Reinhard Lipowsky

A theoretical analysis is developed to investigate the effects of gas expansion due to heat release on unsteady diffusion flames evolving in a pipe flow in which the mixing of reactants is controlled by Taylor's dispersion processes thereby…

Fluid Dynamics · Physics 2024-07-03 Prabakaran Rajamanickam , Adam D. Weiss

We study active agents embedded in bulk or in confinement explicitly considering hydrodynamics and simulating the swimmers via an implementation inspired by the squirmer model. We develop a Dissipative Particle Dynamics scheme for the…

Solute dispersion due to an instantaneously released source in steady, laminar, axisymmetric flows with an axial inflow and radial outflow is investigated analytically. Attention is given to large-time characteristics of dispersion, where…

Fluid Dynamics · Physics 2024-07-02 Prabakaran Rajamanickam

We present an analytical and computational study characterizing the structural and dynamical properties of an active filament confined in cylindrical channels. We first outline the effects of the interplay between confinement and polar…

Soft Condensed Matter · Physics 2024-10-09 José Martín-Roca , Emanuele Locatelli , Valentino Bianco , Paolo Malgaretti , Chantal Valeriani

Transport of colloid particles through narrow channels is ubiquitous in cell biology as well as becoming increasingly important for microfluidic applications or targeted drug delivery. Membrane channels in cells are useful models for…

Soft Condensed Matter · Physics 2017-06-26 S. D. Goldt , E. M. Terentjev

Channel-mediated transport is ubiquitous in biology. A series of works by different theoreticians have sought to determine how the diffusive flux through a channel depends on (a) stochastic gating, (b) channel geometry, and (c)…

Statistical Mechanics · Physics 2026-03-17 Sean D Lawley

While previous experimental and numerical studies of dilute micro-swimmer suspensions have focused on the behaviours of swimmers in the bulk flow and near boundaries, models typically do not account for the interplay between bulk flow and…

Fluid Dynamics · Physics 2023-06-27 Smitha Maretvadakethope , Andrew L. Hazel , Bakhti Vasiev , Rachel N. Bearon

Depending on their mechanism of self-propulsion, active particles can exhibit a time-dependent, often periodic, propulsion velocity. The precise propulsion velocity profile determines their mean square displacement and their effective…

Soft Condensed Matter · Physics 2024-05-06 Arnau Jurado Romero , Carles Calero , Rossend Rey

This study compares turbulent channel flows over elastic walls with those over rough walls, to explore the role of the dynamic change of shape of the wall on turbulence. The comparison is made meaningful by generating rough walls from…

Fluid Dynamics · Physics 2025-09-16 M. Koseki , M. S. Aswathy , M. E. Rosti

The effect of oscillatory shear flows on turbulent transport of passive scalar fields is studied by numerical computations based on the results provided by E. Kim [\emph{Physics of Plasmas}, {\bf 13}, 022308, 2006]. Turbulent diffusion is…

Plasma Physics · Physics 2009-11-13 A. P. L. Newton , E. Kim

We use a stochastic approach to show how Taylor dispersion is affected by kinetic processes of adsorption and desorption onto surfaces. A general theory is developed, from which we derive explicitly the dispersion coefficients of canonical…

Statistical Mechanics · Physics 2013-01-01 Maximilien Levesque , Olivier Bénichou , Raphaël Voituriez , Benjamin Rotenberg

Taylor's model of dispersion simply describes the long-term spread of material along a pipe, channel or river. However, often we need multi-mode models to resolve finer details in space and time. Here we construct zonal models of dispersion…

chao-dyn · Physics 2008-02-03 S. D. Watt , A. J. Roberts

This study uses a combination of stochastic optimization, statistical mechanical theory, and molecular simulation to test the extent to which the long-time dynamics of a single tracer particle can be enhanced by rationally modifying its…

Soft Condensed Matter · Physics 2011-11-24 James Carmer , Gaurav Goel , Mark J. Pond , Jeffrey R. Errington , Thomas M. Truskett

Predicting and controlling the transport of colloids in porous media is essential for a broad range of applications, from drug delivery to contaminant remediation. Chemical gradients are ubiquitous in these environments, arising from…

Soft Condensed Matter · Physics 2026-04-13 Yiran Li , Mobin Alipour , Amir Pahlavan

We study transport of a weakly diffusive pollutant (a passive scalar) by thermoconvective flow in a fluid-saturated horizontal porous layer heated from below under frozen parametric disorder. In the presence of disorder (random frozen…

Fluid Dynamics · Physics 2009-01-06 Denis S. Goldobin , Elizaveta V. Shklyaeva
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