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The demand for high-resolution, non-invasive imaging continues to drive innovation in magnetic resonance imaging (MRI), but long acquisition times remain a major practical limitation. Although deep learning-based reconstruction methods have…

Image and Video Processing · Electrical Eng. & Systems 2026-05-07 Siying Xu , Kerstin Hammernik , Daniel Rueckert , Sergios Gatidis , Thomas Küstner

We investigate the unsupervised learning of non-invertible observation functions in nonlinear state-space models. Assuming abundant data of the observation process along with the distribution of the state process, we introduce a…

Machine Learning · Statistics 2022-07-13 Qingci An , Yannis Kevrekidis , Fei Lu , Mauro Maggioni

In the last years, the design of image reconstruction methods in the field of quantitative Magnetic Resonance Imaging (qMRI) has experienced a paradigm shift. Often, when dealing with (quantitative) MR image reconstruction problems, one is…

Optimization and Control · Mathematics 2024-03-01 Andreas Kofler , Felix Frederik Zimmermann , Kostas Papafitsoros

Functional Magnetic Resonance Imaging (fMRI) is a non-invasive technique for studying brain activity. During an fMRI session, the subject executes a set of tasks (task-related fMRI study) or no tasks (resting-state fMRI), and a sequence of…

Image and Video Processing · Electrical Eng. & Systems 2023-10-10 Christos Theodoropoulos , Christos Chatzichristos , Sabine Van Huffel

Functional magnetic resonance imaging (fMRI) data provides information concerning activity in the brain and in particular the interactions between brain regions. Resting state fMRI data is widely used for inferring connectivities in the…

Applications · Statistics 2019-03-04 Christina Stoehr , John A D Aston , Claudia Kirch

Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features…

Unsupervised feature learning has shown impressive results for a wide range of input modalities, in particular for object classification tasks in computer vision. Using a large amount of unlabeled data, unsupervised feature learning methods…

Computer Vision and Pattern Recognition · Computer Science 2013-04-26 Christian Osendorfer , Justin Bayer , Sebastian Urban , Patrick van der Smagt

Following the success of deep learning in a wide range of applications, neural network-based machine learning techniques have received interest as a means of accelerating magnetic resonance imaging (MRI). A number of ideas inspired by deep…

Signal Processing · Electrical Eng. & Systems 2019-04-03 Florian Knoll , Kerstin Hammernik , Chi Zhang , Steen Moeller , Thomas Pock , Daniel K. Sodickson , Mehmet Akcakaya

We present a new approach for representing and reconstructing multidimensional magnetic resonance imaging (MRI) data. Our method builds on a novel, learned feature-based image representation that disentangles different types of features,…

Image and Video Processing · Electrical Eng. & Systems 2026-01-01 Ruiyang Zhao , Fan Lam

Machine learning is finding increasingly broad application in the physical sciences. This most often involves building a model relationship between a dependent, measurable output and an associated set of controllable, but complicated,…

Computational Physics · Physics 2018-08-29 Brian K. Spears

Using single-task deep learning methods to reconstruct Magnetic Resonance Imaging (MRI) data acquired with different imaging sequences is inherently challenging. The trained deep learning model typically lacks generalizability, and the…

Image and Video Processing · Electrical Eng. & Systems 2024-04-23 Wanyu Bian , Albert Jang , Fang Liu

In neuroimaging, MRI tissue properties characterize underlying neurobiology, provide quantitative biomarkers for neurological disease detection and analysis, and can be used to synthesize arbitrary MRI contrasts. Estimating tissue…

Image and Video Processing · Electrical Eng. & Systems 2021-07-07 Divya Varadarajan , Katherine L. Bouman , Andre van der Kouwe , Bruce Fischl , Adrian V. Dalca

MR imaging is a valuable diagnostic tool allowing to non-invasively visualize patient anatomy and pathology with high soft-tissue contrast. However, MRI acquisition is typically time-consuming, leading to patient discomfort and increased…

Image and Video Processing · Electrical Eng. & Systems 2025-12-23 Jan Nikolas Morshuis , Matthias Hein , Christian F. Baumgartner

Automatic semantic segmentation of magnetic resonance imaging (MRI) images using deep neural networks greatly assists in evaluating and planning treatments for various clinical applications. However, training these models is conditioned on…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Navapat Nananukul , Hamid Soltanian-zadeh , Mohammad Rostami

In recent years, significant progress has been made in developing more accurate and efficient machine learning algorithms for segmentation of medical and natural images. In this review article, we highlight the imperative role of machine…

Image and Video Processing · Electrical Eng. & Systems 2019-11-07 Hyunseok Seo , Masoud Badiei Khuzani , Varun Vasudevan , Charles Huang , Hongyi Ren , Ruoxiu Xiao , Xiao Jia , Lei Xing

Magnetic resonance imaging (MRI) has revolutionized medical imaging, providing a non-invasive and highly detailed look into the human body. However, the long acquisition times of MRI present challenges, causing patient discomfort, motion…

Medical Physics · Physics 2026-01-16 Mojtaba Safari , Zach Eidex , Chih-Wei Chang , Richard L. J. Qiu , Xiaofeng Yang

Functional magnetic resonance imaging (fMRI) is a neuroimaging technique known for its ability to capture brain activity non-invasively and at fine spatial resolution (2-3mm). Cortical surface fMRI (cs-fMRI) is a recent development of fMRI…

Applications · Statistics 2023-12-29 Huy Dang , Marzia Cremona , Nicole Lazar , Francesca Chiaromonte

The success and generalisation of deep learning algorithms heavily depend on learning good feature representations. In medical imaging this entails representing anatomical information, as well as properties related to the specific imaging…

Computer Vision and Pattern Recognition · Computer Science 2020-04-21 Agisilaos Chartsias , Thomas Joyce , Giorgos Papanastasiou , Scott Semple , Michelle Williams , David Newby , Rohan Dharmakumar , Sotirios A. Tsaftaris

In recent years there has been explosive growth in the number of neuroimaging studies performed using functional Magnetic Resonance Imaging (fMRI). The field that has grown around the acquisition and analysis of fMRI data is intrinsically…

Methodology · Statistics 2009-06-22 Martin A. Lindquist

Magnetic Resonance Imaging (MRI) of the brain can come in the form of different modalities such as T1-weighted and Fluid Attenuated Inversion Recovery (FLAIR) which has been used to investigate a wide range of neurological disorders.…

Machine Learning · Computer Science 2019-12-11 Harrison Nguyen , Simon Luo , Fabio Ramos
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