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Networked systems that occur in various domains, such as the power grid, the brain, and opinion networks, are known to obey conservation laws. For instance, electric networks obey Kirchoff's laws, and social networks display opinion…

Systems and Control · Electrical Eng. & Systems 2023-02-02 Anirudh Rayas , Rajasekhar Anguluri , Jiajun Cheng , Gautam Dasarathy

We study the set of output stable configurations of chemical reaction deciders (CRDs). It turns out that CRDs with only bimolecular reactions (which are almost equivalent to population protocols) have a special structure that allows for an…

Computational Complexity · Computer Science 2015-06-16 Robert Brijder

In strictly one-dimensional systems, repulsive interactions tend to reduce particle mobility on a lattice. Therefore, the Drude weight, controlling the divergence at zero-frequency of optical conductivities in perfect conductors, is lower…

Quantum Gases · Physics 2020-04-29 Andreas Haller , Matteo Rizzi , Michele Filippone

The notion of nonreciprocity, in essence when going forwards is different from going backwards, emerges in all branches of physics from cosmology to electromagnetism. Intriguingly, the breakdown of reciprocity is typically associated with…

Quantum Physics · Physics 2022-12-27 C. A. Downing , T. J. Sturges

We consider a biochemical model that consists of a system of partial differential equations based on reaction terms and subject to non--homogeneous Dirichlet boundary conditions. The model is discretised using the gradient discretisation…

Numerical Analysis · Mathematics 2021-11-29 Yahya Alnashri , Hasan Alzubaidi

Contrast consistency, the ability of a model to make consistently correct predictions in the presence of perturbations, is an essential aspect in NLP. While studied in tasks such as sentiment analysis and reading comprehension, it remains…

Computation and Language · Computer Science 2023-05-25 Zhihan Zhang , Wenhao Yu , Zheng Ning , Mingxuan Ju , Meng Jiang

How to improve discriminative feature learning is central in classification. Existing works address this problem by explicitly increasing inter-class separability and intra-class similarity, whether by constructing positive and negative…

Machine Learning · Computer Science 2024-08-21 Qingsong Zhao , Yi Wang , Shuguang Dou , Chen Gong , Yin Wang , Cairong Zhao

Contrastive dimension reduction methods have been developed for case-control study data to identify variation that is enriched in the foreground (case) data X relative to the background (control) data Y. Here, we develop contrastive…

Methodology · Statistics 2024-01-09 Boyang Zhang , Sarah Nyquist , Andrew Jones , Barbara E. Engelhardt , Didong Li

The precise control of complex reactions is critical for biological processes yet our inability to design for specific outcomes limits the development of synthetic analogues. Here, we leverage differentiable simulators to design nontrivial…

Soft Condensed Matter · Physics 2025-05-13 Ryan Krueger , Ella King , Michael Brenner

Domain Randomization (DR) is known to require a significant amount of training data for good performance. We argue that this is due to DR's strategy of random data generation using a uniform distribution over simulation parameters, as a…

Computer Vision and Pattern Recognition · Computer Science 2021-08-31 Rawal Khirodkar , Kris M. Kitani

A new mechanism of LENR in solids is proposed, which is based on the large amplitude anharmonic lattice vibrations, a.k.a. intrinsic localized modes or discrete breathers (DBs). In particular, so called gap DBs, which can arise in diatomic…

Materials Science · Physics 2014-07-24 Vladimir Dubinko

This note shows how classical tools from linear control theory can be leveraged to provide a global analysis of nonlinear reaction-diffusion models. The approach is differential in nature. It proceeds from classical tools of contraction…

Systems and Control · Electrical Eng. & Systems 2020-12-18 Felix Miranda-Villatoro , Rodolphe Sepulchre

This paper focuses on what we call Reaction Network Cardon Dioxide Removal (RNDCR) framework to analyze several proposed negative emissions technologies (NETs) so as to determine when present-day Earth carbon cycle system would exhibit…

Systems and Control · Electrical Eng. & Systems 2024-12-24 Noel Fortun , Piolo Gaspar , Editha Jose , Angelyn Lao , Eduardo Mendoza , Luis Razon

The fluctuation-dissipation relation (FDR) links thermal fluctuations and dissipation at thermal equilibrium through temperature. Extending it beyond equilibrium conditions in pursuit of broadening thermodynamics is often feasible, albeit…

Statistical Mechanics · Physics 2025-02-04 Dima Boriskovsky , Benjamin Lindner , Yael Roichman

A central challenge in neuroscience is to understand neural computations and circuit mechanisms that underlie the encoding of ethologically relevant, natural stimuli. In multilayered neural circuits, nonlinear processes such as synaptic…

Neurons and Cognition · Quantitative Biology 2017-02-09 Lane T. McIntosh , Niru Maheswaranathan , Aran Nayebi , Surya Ganguli , Stephen A. Baccus

Neural networks are often utilised in critical domain applications (e.g. self-driving cars, financial markets, and aerospace engineering), even though they exhibit overconfident predictions for ambiguous inputs. This deficiency demonstrates…

Machine Learning · Computer Science 2023-01-03 John Mitros , Brian Mac Namee

The interaction of phase-separating systems with chemical reactions is of great interest in various contexts, from biology to material science. In biology, phase separation is thought to be the driving force behind the formation of…

Soft Condensed Matter · Physics 2026-01-08 Franco Blanchini , Elisa Franco , Giulia Giordano , Dino Osmanovic

Chemical kinetics plays an important role in governing the thermal evolution in reactive flows problems. The possible interactions between chemical species increase drastically with the number of species considered in the system. Various…

Instrumentation and Methods for Astrophysics · Physics 2022-07-18 Kwok Sun Tang , Matthew Turk

Principles of feedback control have been shown to naturally arise in biological systems and successfully applied to build synthetic circuits. In this work we consider Biochemical Reaction Networks (CRNs) as a paradigm for modelling…

Systems and Control · Computer Science 2019-03-26 Max Whitby , Luca Cardelli , Marta Kwiatkowska , Luca Laurenti , Mirco Tribastone , Max Tschaikowski

This article reports about a novel extension of dissipative particle dynamics (DPD) that allows the study of the collective dynamics of complex chemical and structural systems in a spatially resolved manner with a combinatorially complex…

Subcellular Processes · Quantitative Biology 2011-12-07 Rudolf M. Fuechslin , Thomas Maeke , John S. McCaskill