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Consider an information source generating a symbol at the root of a tree network whose links correspond to noisy communication channels, and broadcasting it through the network. We study the problem of reconstructing the transmitted symbol…

Statistical Mechanics · Physics 2009-11-11 Marc Mezard , Andrea Montanari

The tree reconstruction problem is to collect and analyze massive data at the $n$th level of the tree, to identify whether there is non-vanishing information of the root, as $n$ goes to infinity. Its connection to the clustering problem in…

Machine Learning · Statistics 2019-06-25 Wenjian Liu , Ning Ning

In this paper, we consider a broadcasting process in which information is propagated from a given root node on a noisy tree network, and answer the question that whether the symbols at the nth level of the tree contain non-vanishing…

Probability · Mathematics 2019-02-20 Wenjian Liu , Ning Ning

Quartet Reconstruction, the task of recovering a phylogenetic tree from smaller trees on four species called \textit{quartets}, is a well-studied problem in theoretical computer science with far-reaching connections to statistics, graph…

Data Structures and Algorithms · Computer Science 2026-04-21 Dionysis Arvanitakis , Vaggos Chatziafratis , Yiyuan Luo , Konstantin Makarychev

Recent theoretical studies (Kou et al., 2023; Cao et al., 2022) have revealed a sharp phase transition from benign to harmful overfitting when the noise-to-feature ratio exceeds a threshold-a situation common in long-tailed data…

Machine Learning · Computer Science 2025-06-10 Ruichen Xu , Kexin Chen

We investigate the amount of primordial information that can be reconstructed from spectroscopic galaxy surveys, as well as what sets the noise in reconstruction at low wavenumbers, by studying a simplified universe in which galaxies are…

Cosmology and Nongalactic Astrophysics · Physics 2021-06-23 Matthew McQuinn

We provide high probability finite sample complexity guarantees for hidden non-parametric structure learning of tree-shaped graphical models, whose hidden and observable nodes are discrete random variables with either finite or countable…

Machine Learning · Statistics 2021-04-01 Konstantinos E. Nikolakakis , Dionysios S. Kalogerias , Anand D. Sarwate

Quantum noise is currently limiting efficient quantum information processing and computation. In this work, we consider the tasks of reconstructing and classifying quantum states corrupted by the action of an unknown noisy channel using…

Quantum Physics · Physics 2025-04-01 Angela Rosy Morgillo , Stefano Mangini , Marco Piastra , Chiara Macchiavello

We study quantum networks with tree structures, in which information propagates from a root to leaves. At each node in the network, the received qubit unitarily interacts with fresh ancilla qubits, after which each qubit is sent through a…

Quantum Physics · Physics 2026-01-14 Shiv Akshar Yadavalli , Iman Marvian

Phylogenetic trees and networks are graphs used to model evolutionary relationships, with trees representing strictly branching histories and networks allowing for events in which lineages merge, called reticulation events. While the…

Populations and Evolution · Quantitative Biology 2026-04-17 Martin Frohn , Niels Holtgrefe , Leo van Iersel , Mark Jones , Steven Kelk

We provide high-probability sample complexity guarantees for exact structure recovery and accurate predictive learning using noise-corrupted samples from an acyclic (tree-shaped) graphical model. The hidden variables follow a…

Machine Learning · Statistics 2021-02-18 Konstantinos E. Nikolakakis , Dionysios S. Kalogerias , Anand D. Sarwate

Avoiding overfitting is a central challenge in machine learning, yet many large neural networks readily achieve zero training loss. This puzzling contradiction necessitates new approaches to the study of overfitting. Here we quantify…

Information Theory · Computer Science 2022-10-13 Vudtiwat Ngampruetikorn , David J. Schwab

Background: The reconstruction of the phylogenetic tree topology of four taxa is, still nowadays, one of the main challenges in phylogenetics. Its difficulties lie in considering not too restrictive evolutionary models, and correctly…

Populations and Evolution · Quantitative Biology 2014-06-19 Esther Ibáñez , Marta Casanellas

In this work the information loss in deterministic, memoryless systems is investigated by evaluating the conditional entropy of the input random variable given the output random variable. It is shown that for a large class of systems the…

Information Theory · Computer Science 2013-04-18 Bernhard C. Geiger , Gernot Kubin

The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…

Data Structures and Algorithms · Computer Science 2022-06-16 Eshwar Ram Arunachaleswaran , Anindya De , Sampath Kannan

We investigate the capacity of noisy frequency-based channels, motivated by DNA data storage in the short-molecule regime, where information is encoded in the frequency of items types rather than their order. The channel output is a…

Information Theory · Computer Science 2026-01-16 Yuval Gerzon , Ilan Shomorony , Nir Weinberger

This paper is concerned with the inverse problem of reconstructing an inhomogeneous medium from the acoustic far-field data at a fixed frequency in two dimensions. This inverse problem is severely ill-posed (and also strongly nonlinear),…

Numerical Analysis · Mathematics 2023-09-21 Kai Li , Bo Zhang , Haiwen Zhang

We analyze information transmission in a recently proposed coarse-grained model of polymer replication by framing it as a communication channel between templates and copies. By calculating the mutual information in the steady-state limit of…

Quantitative Methods · Quantitative Biology 2026-04-22 Damián G. Hernández

We investigate a phase transition from linear to nonlinear information processing in echo state networks, a widely used framework in reservoir computing. The network consists of randomly connected recurrent nodes perturbed by a noise and…

Disordered Systems and Neural Networks · Physics 2025-11-25 Masaya Matsumura , Taiki Haga

In the study of Ising models on large locally tree-like graphs, in both rigorous and non-rigorous methods one is often led to understanding the so-called belief propagation distributional recursions and its fixed points. We prove that there…

Information Theory · Computer Science 2023-08-01 Qian Yu , Yury Polyanskiy
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