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A hallmark of bacterial populations cultured in vitro is their homogeneity of growth, where the majority of cells display identical growth rate, cell size and content. Recent insights, however, have revealed that even cells growing in…

Quantitative Methods · Quantitative Biology 2022-06-07 Santosh Pandey , Yunsoo Park , Ankita Ankita , Gregory J. Phillips

Understanding the growth of the cores of giant planets is a difficult problem. Recently, Lambrechts and Johansen (2012; LJ12) proposed a new model in which the cores grow by the accretion of pebble-size objects, as the latter drift towards…

Earth and Planetary Astrophysics · Physics 2015-06-11 Alessandro Morbidelli , David Nesvorny

Surface growth, by association or dissociation of material on the boundaries of a body, is ubiquitous in both natural and engineering systems. It is the fundamental mechanism by which biological materials grow, starting from the level of a…

Soft Condensed Matter · Physics 2019-03-06 Rami Abi-Akl , Rohan Abeyaratne , Tal Cohen

Complex mixing and magnetic field generation occurs within stellar interiors particularly where there is a strong shear flow. To obtain a comprehensive understanding of these processes, it is necessary to study the complex dynamics of shear…

Solar and Stellar Astrophysics · Physics 2018-10-17 V. Witzke , L. J. Silvers , B. Favier

The evolutionary transition to multicellularity transformed life on earth, allowing for the evolution of large, complex organisms. While multicellularity can be strongly advantageous, its earliest stages bring unique physical challenges.…

Predicting rapid and slower soil evolution remains a scientific challenge. This process involves poorly understood aspects of disordered granular matter and dense suspension dynamics. This study presents a novel two-dimensional experiment…

Soft Condensed Matter · Physics 2018-12-21 Morgane Houssais , Charles Maldarelli , Jeffrey F. Morris

The diffusion of particles in complex media has gained significant interest due to its dual relevance: probing the viscoelastic properties of materials via microrheology and assessing the extent of particle displacement over time. In this…

Soft Condensed Matter · Physics 2025-06-24 Fabian A. Garcia Daza , Alvaro Rodriguez-Rivas , Fernando Govantes , Alejandro Cuetos

The growth, form, and division of prebiotic vesicles, membraneous bags of fluid of varying components and shapes is hypothesized to have served as the substrate for the origin of life. The dynamics of these out-of-equilibrium structures is…

Soft Condensed Matter · Physics 2019-07-24 Teresa Ruiz-Herrero , Thomas G. Fai , L. Mahadevan

Spatial constraints such as rigid barriers affect the dynamics of cell populations, potentially altering the course of natural evolution. In this paper, we investigate the population genetics of Escherichia coli proliferating in…

Populations and Evolution · Quantitative Biology 2022-03-28 Anzhelika Koldaeva , Hsieh-Fu Tsai , Amy Q. Shen , Simone Pigolotti

We study pressure-driven propagation of gas into a micron-scale gap between two linearly elastic substrates. Applying the lubrication approximation, the flow-field is governed by the interaction between elasticity and viscosity, as well as…

Fluid Dynamics · Physics 2017-09-07 Shai B. Elbaz , Hila Jacob , Amir D. Gat

Advances in synthetic biology allow us to engineer bacterial collectives with pre-specified characteristics. However, the behavior of these collectives is difficult to understand, as cellular growth and division as well as extra-cellular…

Cell Behavior · Quantitative Biology 2017-09-13 James J. Winkle , Oleg Igoshin , Matthew R. Bennett , Krešimir Josić , William Ott

We prove results on existence and uniqueness of solutions of a system of equations modeling the evolution of a generalized bioconvective flow. The mathematical model considered in the present work describes the convective motion generated…

Analysis of PDEs · Mathematics 2024-02-26 J. L. Boldrini , B. Climent-Ezquerra , M. A. Rojas-Medar , M. D. Rojas-Medar

Conjugation is the primary mechanism of horizontal gene transfer that spreads antibiotic resistance among bacteria. Although conjugation normally occurs in surface-associated growth (e.g., biofilms), it has been traditionally studied in…

Quantitative Methods · Quantitative Biology 2014-02-26 Peter D. Freese , Kirill S. Korolev , Jose I. Jimenez , Irene A. Chen

The transition from localized to systemic spreading of bacteria, viruses and other agents is a fundamental problem that spans medicine, ecology, biology and agriculture science. We have conducted experiments and simulations in a simple…

Populations and Evolution · Quantitative Biology 2009-11-10 Anna L. Lin , Bernward A. Mann , Gelsy Torres-Oviedo , Bryan Lincoln , Josef Kas , Harry L. Swinney

Experimental and theoretical studies on wind-wave generation have focused primarily on the air-water interface, where viscous effects are small. Here we characterize the influence of the liquid viscosity on the growth of mechanically…

Fluid Dynamics · Physics 2023-10-13 J. Zhang , A. Hector , M. Rabaud , F. Moisy

Nutrient limitation is one of the most common triggers of antibiotic tolerance and persistence. Here, we present two microfluidic setups to study how spatial and temporal variation in nutrient availability lead to increased survival of…

Quantitative Methods · Quantitative Biology 2020-10-29 Stefany Moreno-Gámez , Alma Dal Co , Simon van Vliet , Martin Ackermann

A great number of biological organisms live in aqueous environments. Major evolutionary transitions, including the emergence of life itself, likely occurred in such environments. While the chemical aspects of the role of water in biology…

Populations and Evolution · Quantitative Biology 2020-07-01 Madison S. Krieger , Sam Sinai , Martin A. Nowak

The effect of substrate topography on the settlement of coral larvae in wave-driven oscillatory flow is investigated using computational fluid dynamics coupled to a 2D agent-based simulation of individual larvae. Substrate topography…

Fluid Dynamics · Physics 2025-05-30 Daniel Gysbers , Mark A. Levenstein , Gabriel Juarez

The thermodynamic structure of protoplanetary discs is determined by dust opacities, which depend on the size of the dust grains and their chemical composition. In the inner regions, the grain sizes are regulated by the level of turbulence…

Earth and Planetary Astrophysics · Physics 2021-06-30 Jonas Müller , Sofia Savvidou , Bertram Bitsch

The spatio-temporal dynamics of a population present one of the most fascinating aspects and challenges for ecological modelling. In this article we review some simple mathematical models, based on one dimensional…

Populations and Evolution · Quantitative Biology 2008-11-18 A. B. Ryabov , B. Blasius
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