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Epileptic Seizure is an abnormal neuronal exertion in the brain, affecting nearly 70 million of the world's population (Ngugi et al., 2010). So many open-source neuroimaging tools are used for metabolism checkups and analysis purposes. The…

Medical Physics · Physics 2023-08-16 Jayanthi Vajiram , Aishwarya Senthil , Utkarsh Maurya

Machine learning models make mistakes, yet sometimes it is difficult to identify the systematic problems behind the mistakes. Practitioners engage in various activities, including error analysis, testing, auditing, and red-teaming, to form…

Software Engineering · Computer Science 2024-09-17 Chenyang Yang , Yining Hong , Grace A. Lewis , Tongshuang Wu , Christian Kästner

User simulators can rapidly generate a large volume of timely user behavior data, providing a testing platform for reinforcement learning-based recommender systems, thus accelerating their iteration and optimization. However, prevalent user…

Information Retrieval · Computer Science 2024-12-24 Zijian Zhang , Shuchang Liu , Ziru Liu , Rui Zhong , Qingpeng Cai , Xiangyu Zhao , Chunxu Zhang , Qidong Liu , Peng Jiang

Spectral line observations are an indispensable tool to remotely probe the physical and chemical conditions throughout the universe. Modelling their behaviour is a computational challenge that requires dedicated software. In this paper, we…

Instrumentation and Methods for Astrophysics · Physics 2024-11-06 Thomas Ceulemans , Frederik De Ceuster , Leen Decin , Jeremy Yates

Software Engineering practitioners work using highly diverse methods and practices, and general theories in software engineering are lacking. One attempt at creating a common ground in the area of software engineering methodologies has been…

Software Engineering · Computer Science 2018-08-09 Arthur Evensen , Kai-Kristian Kemell , Xiaofeng Wang , Juhani Risku , Pekka Abrahamsson

This paper proposes a new challenge problem for software analytics. In the process we shall call "software review", a panel of SMEs (subject matter experts) review examples of software behavior to recommend how to improve that's software's…

Software Engineering · Computer Science 2024-05-22 Tim Menzies , Andre Lustosa

Scientists and engineers use simulators to model empirically observed phenomena. However, tuning the parameters of a simulator to ensure its outputs match observed data presents a significant challenge. Simulation-based inference (SBI)…

Seglearn is an open-source python package for machine learning time series or sequences using a sliding window segmentation approach. The implementation provides a flexible pipeline for tackling classification, regression, and forecasting…

Machine Learning · Statistics 2019-01-28 David M. Burns , Cari M. Whyne

Evaluating aligned large language models' (LLMs) ability to recognize and reject unsafe user requests is crucial for safe, policy-compliant deployments. Existing evaluation efforts, however, face three limitations that we address with…

The item response model in latent space (LSIRM; Jeon et al., 2021) uncovers unobserved interactions between respondents and items in the item response data by embedding both in a shared latent metric space. The R package lsirm12pl…

Methodology · Statistics 2025-03-11 Dongyoung Go , Gwanghee Kim , Jina Park , Junyong Park , Minjeong Jeon , Ick Hoon Jin

Currently, there are thousands of large pretrained language models (LLMs) available to social scientists. How do we select among them? Using validity, reliability, reproducibility, and replicability as guides, we explore the significance…

Computation and Language · Computer Science 2026-01-19 Dustin S. Stoltz , Marshall A. Taylor , Sanuj Kumar

This paper describes and illustrates the functionality of the baker R package. The package estimates a suite of nested partially-latent class models (NPLCM) for multivariate binary responses that are observed under a case-control design.…

Methodology · Statistics 2022-02-25 Irena B Chen , Qiyuan Shi , Scott L Zeger , Zhenke Wu

We present a new design pattern for high-performance parallel scientific software, named coalesced communication. This pattern allows for a structured way to improve the communication performance through coalescence of multiple…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-10-17 Hywel B. Carver , Derek Groen , James Hetherington , Rupert W. Nash , Miguel O. Bernabeu , Peter V. Coveney

One of the pillars of any machine learning model is its concepts. Using software engineering, we can engineer these concepts and then develop and expand them. In this article, we present a SELM framework for Software Engineering of machine…

Software Engineering · Computer Science 2021-03-23 Nafiseh Jafari , Mohammad Reza Besharati , Mohammad Izadi , Maryam Hourali

A fundamental bottleneck in utilising complex machine learning systems for critical applications has been not knowing why they do and what they do, thus preventing the development of any crucial safety protocols. To date, no method exist…

Machine Learning · Computer Science 2023-01-18 Jan Rosenzweig , Zoran Cvetkovic , Ivana Rosenzweig

When successful, Open Source Software (OSS) projects create enormous value, but most never reach a sustainable state. Recent work has produced accurate models that forecast OSS sustainability, yet these models rarely tell maintainers what…

Software Engineering · Computer Science 2026-02-13 Nafiz Imtiaz Khan , Vladimir Filkov

Creating large-scale verifiable training datasets for issue-resolving tasks is a critical yet notoriously difficult challenge. Existing methods on automating the Gym environment setup process for real-world issues suffer from low success…

Software Engineering · Computer Science 2025-09-11 Junhao Wang , Daoguang Zan , Shulin Xin , Siyao Liu , Yurong Wu , Kai Shen

Modeling structure and behavior of software systems plays a crucial role in the industrial practice of software engineering. As with other software engineering artifacts, software models are subject to evolution. Supporting modelers in…

Software Engineering · Computer Science 2026-01-21 Christof Tinnes , Alisa Welter , Sven Apel

Recent studies highlight that deep learning models often learn spurious features mistakenly linked to labels, compromising their reliability in real-world scenarios where such correlations do not hold. Despite the increasing research…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Xiwei Xuan , Ziquan Deng , Hsuan-Tien Lin , Kwan-Liu Ma

Background: Data mining and analyzing of public Git software repositories is a growing research field. The tools used for studies that investigate a single project or a group of projects have been refined, but it is not clear whether the…

Software Engineering · Computer Science 2020-08-18 Adam Tutko , Austin Henley , Audris Mockus