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Direct numerical simulations (DNS) of microscale fluid-structure interactions (mFSI) in multicomponent multiphase flows pose many challenges, including the thermodynamic consistency of multiphysics couplings, tracking of moving interfaces,…

Fluid Dynamics · Physics 2025-08-08 Min Gao , Zhihao Li , Xinpeng Xu

Stochastic chemical systems with diffusion are modeled with a reaction-diffusion master equation. On a macroscopic level, the governing equation is a reaction-diffusion equation for the averages of the chemical species. On a mesoscopic…

Numerical Analysis · Mathematics 2009-03-06 Stefan Engblom , Lars Ferm , Andreas Hellander , Per Lötstedt

In this work, the influence of geometry and domain size on spatiotemporal pattern formation is investigated to establish parameter spaces for a cross-diffusive reaction-diffusion model on an annulus. By applying linear stability theory, we…

Dynamical Systems · Mathematics 2024-12-31 Gulsemay Yigit , Wakil Sarfaraz , Raquel Barreira , Anotida Madzvamuse

This contribution presents a diffuse framework for modeling cracks in heterogeneous media. Interfaces are depicted by static phase-fields. This concept allows the use of non-conforming meshes. Another phase-field is used to describe the…

Materials Science · Physics 2020-05-11 Arne Claus Hansen-Dörr , Franz Dammaß , René de Borst , Markus Kästner

We study the nonequilibrium phase transition in a model of aggregation of masses allowing for diffusion, aggregation on contact and fragmentation. The model undergoes a dynamical phase transition in all dimensions. The steady state mass…

Statistical Mechanics · Physics 2015-06-25 Satya N. Majumdar , Supriya Krishnamurthy , Mustansir Barma

Understanding the contact dynamics of nonspherical particles beyond the microscale is crucial for accurately modeling colloidal and granular systems, where shape anisotropy dictates structural organization and transport properties. In this…

Soft Condensed Matter · Physics 2026-03-06 Haoyuan Shi , Christopher J. Mundy , Gregory K. Schenter , Jaehun Chun

Diffusion-mediated surface phenomena are crucial for human life and industry, with examples ranging from oxygen capture by lung alveolar surface to heterogeneous catalysis, gene regulation, membrane permeation and filtration processes.…

Statistical Mechanics · Physics 2020-08-19 Denis S. Grebenkov

The replicator equation is ubiquitous for many areas of mathematical biology. One of major shortcomings of this equation is that it does not allow for an explicit spatial structure. Here we review analytical approaches to include spatial…

Populations and Evolution · Quantitative Biology 2011-05-06 Artem S. Novozhilov , Vladimir P. Posvyanskii , Alexander S. Bratus

In this paper, a thermodynamically consistent phase-field model is proposed to describe the mass transport and reaction processes of multiple species in a fluid. A key feature of this model is that reactions between different species occur…

Numerical Analysis · Mathematics 2025-03-24 Zhaoyang Wang , Huaxiong Huang , Ping Lin , Shixin Xu

Deterministic diffusive systems such as the periodic Lorentz gas, multi-baker map, as well as spatially periodic systems of interacting particles, have non-equilibrium stationary states with fractal properties when put in contact with…

Statistical Mechanics · Physics 2009-08-28 Felipe Barra , Pierre Gaspard , Thomas Gilbert

A phase-space formulation of non-stationary nonlinear dynamics including both Hamiltonian (e.g., quantum-cosmological) and dissipative (e.g., dissipative laser) systems reveals an unexpected affinity between seemly different branches of…

Pattern Formation and Solitons · Physics 2019-05-30 Vladimir L. Kalashnikov , Sergey L. Cherkas

The diffusion of particles trapped in long narrow channels occurs predominantly in one dimension. Here, molecular dynamics simulation is used to study the inertial dynamics of two-dimensional hard disks, confined to long, narrow,…

Soft Condensed Matter · Physics 2020-02-05 Mahdi Zarif , Richard K. Bowles

We consider a system of reaction-diffusion equations in a bounded interval of the real line, with emphasis on the metastable dynamics, whereby the time-dependent solution approaches the steady state in an asymptotically exponentially long…

Analysis of PDEs · Mathematics 2016-06-27 Marta Strani

Molecular Dynamics - Green's Functions Reaction Dynamics (MD-GFRD) is a multiscale simulation method for particle dynamics or particle-based reaction-diffusion dynamics that is suited for systems involving low particle densities. Particles…

Chemical Physics · Physics 2017-12-06 Luigi Sbailò , Frank Noé

Generative diffusion models have achieved remarkable success in producing high-quality images. However, these models typically operate in continuous intensity spaces, diffusing independently across pixels and color channels. As a result,…

Graphics · Computer Science 2025-05-20 Javier E. Santos , Agnese Marcato , Roman Colman , Nicholas Lubbers , Yen Ting Lin

This paper treats the solvability of a semilinear reaction-diffusion system, which incorporates transport (diffusion) and reaction effects emerging from two separated spatial scales: $x$ - macro and $y$ - micro. The system's origin connects…

Analysis of PDEs · Mathematics 2012-02-10 Tasnim Fatima , Adrian Muntean , Toyohiko Aiki

Mechanically induced crystallographic phase transformation that reflects dynamic stress responses of intrinsically stochastic nature is a pertinent yet much less well-understood phenomenon. We focus on understanding the physical…

Materials Science · Physics 2021-09-21 Arijit Maitra , Bipin Singh

In this paper we consider the mathematical relationship between nonlocal interactions of convolution type and multiple diffusive substances in high dimensions. Motivated by that the nonlocal evolution equations reproduce similar patterns to…

Analysis of PDEs · Mathematics 2025-11-07 Hiroshi Ishii , Yoshitaro Tanaka

Local detailed balance (LDB) is a central guiding principle for modeling nonequilibrium stochastic dynamics, yet it only constrains the ratio of forward and backward transition rates and does not fix the steady state. Although the…

Statistical Mechanics · Physics 2026-05-26 Takahiro Kanazawa , Kyogo Kawaguchi , Kyosuke Adachi

We present a generalized kinetic model for gas-solid heterogeneous reactions taking place at the interface between two phases. The model studies the reaction kinetics by taking into account the reactions at the interface, as well as the…

Chemical Physics · Physics 2018-08-06 Zhijie Xu , Xin Sun , Mohammad A Khaleel