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The evaluation of clustering algorithms can involve running them on a variety of benchmark problems, and comparing their outputs to the reference, ground-truth groupings provided by experts. Unfortunately, many research papers and graduate…

Machine Learning · Computer Science 2023-10-27 Marek Gagolewski

Every year the PHENIX collaboration deals with increasing volume of data (now about 1/4 PB/year). Apparently the more data the more questions how to process all the data in most efficient way. In recent past many developments in HEP…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Barbara Jacak , Roy Lacey , Dave Morrison , Irina Sourikova , Andrey Shevel , Qiu Zhiping

High Energy and Nuclear Physics (HENP) libraries are now required to be more and more multi-thread-safe, if not multi-thread-friendly and multi-threaded. This is usually done using the new constructs and library components offered by the…

Digital Libraries · Computer Science 2018-08-21 S. Binet

Across almost all scientific disciplines, the instruments that record our experimental data and the methods required for storage and data analysis are rapidly increasing in complexity. This gives rise to the need for scientific communities…

Physics Education · Physics 2018-09-26 Daniela Huppenkothen , Anthony Arendt , David W. Hogg , Karthik Ram , Jake VanderPlas , Ariel Rokem

Mainstream knowledge management researchers generally agree that knowledge extracted from unstructured data and semi-structured data have become imperative for organizational strategic decision making. In this research, we develop a…

Information Retrieval · Computer Science 2020-07-15 Gerald Onwujekwe , Kweku-Muata Osei-Bryson , Nnatubemugo Ngwum

Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics…

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura

Today most applications continuously produce information under the form of streams, due to the advent of the means of collecting data. Sensors and social networks collect an immense variety and volume of data, from different real-life…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-17 Vitor Pinheiro de Almeida , Sukanya Bhowmik , Markus Endler , Kurt Rothermel

Many workflows in high-energy-physics (HEP) stand to benefit from recent advances in transformer-based large language models (LLMs). While early applications of LLMs focused on text generation and code completion, modern LLMs now support…

High Energy Physics - Phenomenology · Physics 2025-12-19 Tony Menzo , Alexander Roman , Sergei Gleyzer , Konstantin Matchev , George T. Fleming , Stefan Höche , Stephen Mrenna , Prasanth Shyamsundar

Signal processing is a fundamental component of almost any sensor-enabled system, with a wide range of applications across different scientific disciplines. Time series data, images, and video sequences comprise representative forms of…

Optimal use of computing resources requires extensive coding, tuning and benchmarking. To boost developer productivity in these time consuming tasks, we introduce the Experimental Linear Algebra Performance Studies framework (ELAPS), a…

Performance · Computer Science 2015-05-01 Elmar Peise , Paolo Bientinesi

Modern big data workflows are characterized by computationally intensive kernels. The simulated results are often combined with knowledge extracted from AI models to ultimately support decision-making. These energy-hungry workflows are…

Scalable and efficient numerical simulations continue to gain importance, as computation is firmly established as the third pillar of discovery, alongside theory and experiment. Meanwhile, the performance of computing hardware grows through…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-26 Pietro Incardona , Antonio Leo , Yaroslav Zaluzhnyi , Rajesh Ramaswamy , Ivo F. Sbalzarini

High-Level Synthesis (HLS) is emerging as a mainstream design methodology, allowing software designers to enjoy the benefits of a hardware implementation. Significant work has led to effective compilers that produce high-quality hardware…

Software Engineering · Computer Science 2015-08-28 Jeffrey Goeders , Steven J. E. Wilton

In this paper, we present a machine learning-based data generator framework tailored to aid researchers who utilize simulations to examine various physical systems or processes. High computational costs and the resulting limited data often…

Machine Learning · Computer Science 2023-05-17 Sabber Ahamed , Md Mesbah Uddin

In recent years, the research community, but also the general public, has raised serious questions about the reproducibility and replicability of scientific work. Since many studies include some kind of computational work, these issues are…

Software Engineering · Computer Science 2025-03-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

Accurately estimate performance of currently available processors is becoming a key activity, particularly in HENP environment, where high computing power is crucial. This document describes the methods and programs, opensource or freeware,…

High Energy Physics - Experiment · Physics 2007-05-23 R. Esposito , P. Mastroserio , G. Tortone , F. M. Taurino

To satisfy the principles of FAIR software, software sustainability and software citation, research software must be formally published. Publication repositories make this possible and provide published software versions with unique and…

Software Engineering · Computer Science 2022-01-25 Stephan Druskat , Oliver Bertuch , Guido Juckeland , Oliver Knodel , Tobias Schlauch

Careful preservation of experimental data, simulations, analysis products, and theoretical work maximizes their long-term scientific return on investment by enabling new analyses and reinterpretation of the results in the future. Key…

Computational Physics · Physics 2022-09-20 Stephen Bailey , K. S. Cranmer , Matthew Feickert , Rob Fine , Sabine Kraml , Clemens Lange

A concept of "evolving categories" is suggested to build a simple, scalable, mathematically consistent framework for representing in uniform way both data and algorithms. A state machine for executing algorithms becomes clear, rich and…

Data Structures and Algorithms · Computer Science 2007-05-23 Evgeny Yanenko