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Simulation of the monodomain equation, crucial for modeling the heart's electrical activity, faces scalability limits when traditional numerical methods only parallelize in space. To optimize the use of large multi-processor computers by…

Numerical Analysis · Mathematics 2024-05-31 Giacomo Rosilho de Souza , Simone Pezzuto , Rolf Krause

The increasing complexity and scale of photonic and electromagnetic devices demand efficient and accurate numerical solvers. In this work, we develop a parallel overlapping domain decomposition method (DDM) based on the finite-difference…

Optics · Physics 2025-09-26 Zhanwen Wang , Chengnian Huang , Wangtao Lu , Yuntian Chen , Wei E. I. Sha

This article introduces a new fast direct solver for linear systems arising out of wide range of applications, integral equations, multivariate statistics, radial basis interpolation, etc., to name a few. \emph{The highlight of this new…

Numerical Analysis · Mathematics 2014-07-08 Sivaram Ambikasaran , Eric Darve

The Massively Parallel Computation (MPC) model serves as a common abstraction of many modern large-scale parallel computation frameworks and has recently gained a lot of importance, especially in the context of classic graph problems.…

Data Structures and Algorithms · Computer Science 2018-07-20 Sebastian Brandt , Manuela Fischer , Jara Uitto

We propose HAMSI (Hessian Approximated Multiple Subsets Iteration), which is a provably convergent, second order incremental algorithm for solving large-scale partially separable optimization problems. The algorithm is based on a local…

In this paper, we present a concurrent implementation of a powerful topological thinning operator. This operator is able to act directly over grayscale images without modifying their topology. We introduce an adapted parallelization…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-31 Ramzi Mahmoudi , Mohamed Akil , Petr Matas

Parallelization is a necessity for large-scale simulations due to the amount of data processed. In this article we investigate different load balancing methods using Vlasiator, a global magnetospheric simulation as our case study. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-28 Leo Kotipalo , Markus Battarbee , Yann Pfau-Kempf , Vertti Tarvus , Minna Palmroth

Compared with the remarkable progress made in parallel numerical solvers of partial differential equations,the development of algorithms for generating unstructured triangular/tetrahedral meshes has been relatively sluggish. In this paper,…

Numerical Analysis · Mathematics 2024-09-19 Chengdi Ma , Jizu Huang , Hao Luo , Chao Yang

The goal of load balancing (grid partitioning) is to minimize overall computations and communications, and to make sure that all processors have a similar workload. Geometric methods divide a grid by using a location of a cell while…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-07 Hui Liu , Kun Wang , Bo Yang , Min Yang , Ruijian He , Lihua Shen , He Zhong , Zhangxin Chen

The plane wave method is most widely used for solving the Kohn-Sham equations in first-principles materials science computations. In this procedure, the three-dimensional (3-dim) trial wave functions' fast Fourier transform (FFT) is a…

Computational Physics · Physics 2018-01-17 Xingyu Gao , Zeyao Mo , Jun Fang , Han Wang

A parallel cut-cell algorithm is described to solve the free-boundary problem of the Grad-Shafranov equation. The algorithm reformulates the free-boundary problem in an irregular bounded domain and its important aspects include a searching…

Numerical Analysis · Mathematics 2021-08-31 Shuang Liu , Qi Tang , Xian-Zhu Tang

General matrix/matrix multiplication (GEMM) is crucial for scientific computing and machine learning. However, the increased scale of the computing platforms raises concerns about hardware and software reliability. In this poster, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-10 Shixun Wu , Yujia Zhai , Jiajun Huang , Zizhe Jian , Zizhong Chen

A novel 3-D higher-order finite-difference time-domain framework with complex frequency-shifted perfectly matched layer for the modeling of wave propagation in cold plasma is presented. Second- and fourth-order spatial approximations are…

Plasma Physics · Physics 2013-10-25 Konstantinos P. Prokopidis

We present factorization and solution phases for a new linear complexity direct solver designed for concurrent batch operations on fine-grained parallel architectures, for matrices amenable to hierarchical representation. We focus on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-16 Wajih Boukaram , David Keyes , Sherry Li , Yang Liu , George Turkiyyah

The recent evolution of software and hardware technologies is leading to a renewed computational interest in Particle-In-Cell (PIC) methods such as the Material Point Method (MPM). Indeed, provided some critical aspects are properly…

Computational Physics · Physics 2024-12-11 Paolo Joseph Baioni , Tommaso Benacchio , Luigi Capone , Carlo de Falco

Typical areas of application of explicit dynamics are impact, crash test, and most importantly, wave propagation simulations. Due to the numerically highly demanding nature of these problems, efficient automatic mesh generators and…

Computational Engineering, Finance, and Science · Computer Science 2021-04-21 Junqi Zhang , Ankit Ankit , Hauke Gravenkamp , Sascha Eisenträger , Chongmin Song

Purpose: To develop a general framework for Parallel Imaging (PI) with the use of Maxwell regularization for the estimation of the sensitivity maps (SMs) and constrained optimization for the parameter-free image reconstruction. Theory and…

Image and Video Processing · Electrical Eng. & Systems 2020-08-21 Matteo Alessandro Francavilla , Stamatios Lefkimmiatis , Jorge F. Villena , Athanasios G. Polimeridis

We describe a new, adaptive solver for the two-dimensional Poisson equation in complicated geometries. Using classical potential theory, we represent the solution as the sum of a volume potential and a double layer potential. Rather than…

Numerical Analysis · Mathematics 2022-11-29 Fredrik Fryklund , Leslie Greengard

Particle-in-cell methods couple mesh-based methods for the solution of continuum mechanics problems, with the ability to advect and evolve particles. They have a long history and many applications in scientific computing. However, they have…

Numerical Analysis · Mathematics 2019-09-12 R. Gassmoeller , E. Heien , E. G. Puckett , W. Bangerth

While fast multipole methods (FMMs) are in widespread use for the rapid evaluation of potential fields governed by the Laplace, Helmholtz, Maxwell or Stokes equations, their coupling to high-order quadratures for evaluating layer potentials…

Numerical Analysis · Mathematics 2021-04-26 Leslie Greengard , Michael O'Neil , Manas Rachh , Felipe Vico
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