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The complexity of the data generated by (magneto)-hydrodynamic (HD/MHD) simulations requires advanced tools for their analysis and visualization. The dramatic improvements in virtual reality (VR) technologies have inspired us to seek the…

Human-Computer Interaction · Computer Science 2023-08-09 S. Orlando , M. Miceli , U. Lo Cicero , S. Ustamujic

Eficient, physically-inspired descriptors of the structure and composition of molecules and materials play a key role in the application of machine-learning techniques to atomistic simulations. The proliferation of approaches, as well as…

Computational Physics · Physics 2020-12-11 Alexander Goscinski , Guillaume Fraux , Giulio Imbalzano , Michele Ceriotti

Machine Learning produces efficient decision and prediction models based on input-output data only. Such models have the form of decision trees or neural nets and are far from transparent analytical models, based on mathematical formulas.…

Artificial Intelligence · Computer Science 2025-05-20 Jakub Skrzyński , Dominik Sepioło , Antoni Ligęza

Complex networks theory has commonly been used for modelling and understanding the interactions taking place between the elements composing complex systems. More recently, the use of generative models has gained momentum, as they allow…

Physics and Society · Physics 2016-05-19 Massimiliano Zanin , Marco Correia , Pedro A. C. Sousa , Jorge Cruz

Urban modeling is essential for city planning, scene synthesis, and gaming. Existing image-based methods generate diverse layouts but often lack geometric continuity and scalability, while graph-based methods capture structural relations…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Mengyuan Niu , Xinxin Zhuo , Ruizhe Wang , Yuyue Huang , Junyan Yang , Qiao Wang

To date, most probabilistic reasoning systems have relied on a fixed belief network constructed at design time. The network is used by an application program as a representation of (in)dependencies in the domain. Probabilistic inference…

Artificial Intelligence · Computer Science 2013-03-25 Robert P. Goldman , John S. Breese

Cell formation problem is among the first obstacles the designer of cellular production systems must overcome. This paper presents a critical analysis of the various criteria and constraints considered in the literature. The objective is to…

Computational Engineering, Finance, and Science · Computer Science 2020-07-23 Menouar Boulif , Karim Atif

This study proposes a dynamic rule data mining algorithm based on an improved Transformer architecture, aiming to improve the accuracy and efficiency of rule mining in a dynamic data environment. With the increase in data volume and…

Machine Learning · Computer Science 2025-03-17 Jie Liu , Yiwei Zhang , Yuan Sheng , Yujia Lou , Haige Wang , Bohuan Yang

We present a new efficient algortithm for construction of linear latent structure (LLS) models. This algorithm reduces a problem of estimation of model parameters to a sequence of problems of linear algebra, which assures a low…

Probability · Mathematics 2007-06-13 Mikhail Kovtun , Igor Akushevich , Kenneth G. Manton , H. Dennis Tolley

Theoretical concepts in condensed matter physics are typically verified and also developed by exploiting computer simulations mostly in simple models. Predictions based on these usually isotropic models are often at odds with measurement…

Soft Condensed Matter · Physics 2020-11-13 K. Koperwas , A. Grzybowski , M. Paluch

For the challenging task of modeling multivariate time series, we propose a new class of models that use dependent Mat\'ern processes to capture the underlying structure of data, explain their interdependencies, and predict their unknown…

Machine Learning · Statistics 2015-02-13 Alexander Vandenberg-Rodes , Babak Shahbaba

The massive increase in the data volume and dataset availability for analysts compels researchers to focus on data content and select high-quality datasets to enhance the performance of analytics operators. While selecting high-quality data…

Machine Learning · Computer Science 2025-08-25 Andreas Loizou , Dimitrios Tsoumakos

The emergence of multicellularity and developmental programs are among the major problems of evolutionary biology. Traditionally, research in this area has been based on the combination of data analysis and experimental work on one hand and…

Populations and Evolution · Quantitative Biology 2014-03-14 Ricard V. Solé , Salva Duran-Nebreda

In this work, we describe a self-replication-based mechanism for designing agents of increasing complexity. We demonstrate the validity of this approach by solving simple, standard evolutionary computation problems in simulation. In the…

Neural and Evolutionary Computing · Computer Science 2018-07-20 Thommen George Karimpanal

Although generative models hold promise for discovering molecules with optimized desired properties, they often fail to suggest synthesizable molecules that improve upon the known molecules seen in training. We find that a key limitation is…

Machine Learning · Computer Science 2025-01-07 Evan R. Antoniuk , Peggy Li , Nathan Keilbart , Stephen Weitzner , Bhavya Kailkhura , Anna M. Hiszpanski

Simulation ensembles are a common tool in physics for understanding how a model outcome depends on input parameters. We analyze an active particle system, where each particle can use energy from its surroundings to propel itself. A…

Human-Computer Interaction · Computer Science 2023-03-21 Marina Evers , Raphael Wittkowski , Lars Linsen

Mesoscale simulations of woven composites using parameterized analytical geometries offer a way to connect constituent material properties and their geometric arrangement to effective composite properties and performance. However, the…

Materials Science · Physics 2023-02-21 Collin W. Foster , Lincoln N. Collins , Francesco Panerai , Scott A. Roberts

Proteins play crucial roles in every cellular process by interacting with each other, with nucleic acids, metabolites, and other molecules. The resulting assemblies can be very large and intricate and pose challenges to experimental…

Biomolecules · Quantitative Biology 2021-03-16 Charlotte W. van Noort , Rodrigo V. Honorato , Alexandre M. J. J. Bonvin

Molecular dynamics simulations are an important tool for describing the evolution of a chemical system with time. However, these simulations are inherently held back either by the prohibitive cost of accurate electronic structure theory…

Chemical Physics · Physics 2018-12-20 Michael Gastegger , Philipp Marquetand

The scarcity of molecules with desirable properties (i.e., `positive' molecules) is an inherent bottleneck for generative molecule design. To sidestep such obstacle, here we propose molecular task arithmetic: training a model on diverse and…

Machine Learning · Computer Science 2025-12-09 Rıza Özçelik , Sarah de Ruiter , Francesca Grisoni