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Interactions between biomolecules, electrons and protons are essential to many fundamental processes sustaining life. It is therefore of interest to build mathematical models of these bioelectrical processes not only to enhance…
Mechanical algesia is an important process for the preservation of living organisms, allowing potentially life-saving reflexes or decisions when given body parts are stressed. Yet, its various underlying mechanisms remain to be fully…
Interacting systems can be studied as the networks where nodes are system units and edges denote correlated interactions. Although percolation on network is a unified way to model the emergence and propagation of correlated behaviours, it…
Dynamic shearing banding and fracturing in unsaturated porous media is a significant problem in engineering and science. This article proposes a multiphase micro-periporomechanics (uPPM) paradigm for modeling dynamic shear banding and…
Understanding the thermodynamic properties of high-$T_c$ cuprate superconductors is a key step to establish a satisfactory theory of these materials. The electronic specific heat is highly unconventional, distinctly non-BCS, with remarkable…
We study a coarse-grained model for a water monolayer that cannot crystallize due to the presence of confining interfaces, such as protein powders or inorganic surfaces. Using both Monte Carlo simulations and mean field calculations, we…
Magnetized nonneutral plasma composed of electrons or positrons couples to the local microwave environment via cyclotron radiation. The equilibrium plasma temperature depends on the microwave energy density near the cyclotron frequency.…
We propose a new theoretical approach to analyze the experimental data for thermal conductivity of single-grain $i$-AlPdMn quasicrystals. The interpretation is based on the picture where cluster interfaces are the main source of phonon…
In unconventional high-$T_c$ cuprate superconductors, the intricate interplay between the non-ergodic bad metal and the strange metal state has remained enigmatic. Herein, we unravel this mystery using ab initio molecular dynamics…
We perform simulations of a system containing simple model proteins and a polymer representing chromatin. We study the interplay between protein-protein and protein-chromatin interactions, and the resulting condensates which arise due to…
Protein folding is a phenomenon that has been studied for about 50 years and still remains as an unsolved problem. The main feature of this process is that it occurs as an all or none process, so a protein, can jump directly between folded…
We propose an embedding of standard active particle models in terms of two-temperature processes. One temperature refers to an ambient thermal bath, and the other temperature effectively describes ``hot spots,'' i.e., systems with few…
We demonstrate and characterize that a carrier-envelope-phase (CEP)-controlled ultrashortchirped field is an efficient and robust mechanism to modify the dissociation dynamics of molecularhydrogen. Different dissociation pathways are…
I review our current understanding of the processes driving the thermalization and isotropization of the quark gluon plasma (QGP) created in ultrarelativistic heavy ion collisions (URHICs). I begin by discussing the phenomenological…
We calculate thermodynamic quantities of HP lattice proteins by means of a multicanonical chain growth algorithm that connects the new variants of the Pruned-Enriched Rosenbluth Method (nPERM) and flat histogram sampling of the entire…
Understanding how proteins fold into their native structure is a fundamental problem in biophysics, crucial for protein design. It has been hypothesized that the formation of a molten globule intermediate precedes folding to the native…
Many dynamical systems consist of multiple, co-evolving subsystems (degrees of freedom). These subsystems often depend upon each other in a way that restricts the overall system's dynamics. How does this network of dependencies affect the…
We reexamine the scenario of homogeneous nucleation of the quark-gluon plasma produced in ultra-relativistic heavy ion collisions. A generalization of the standard nucleation theory to rapidly expanding system is proposed. The nucleation…
Dissipative particle dynamics (DPD) does not conserve energy and this precludes its use in the study of thermal processes in complex fluids. We present here a generalization of DPD that incorporates an internal energy and a temperature…
We model neutron star cooling with several microscopic nuclear equations of state based on different nucleon-nucleon interactions and three-body forces, and compatible with the recent GW170817 neutron star merger event. They all feature…