Related papers: On Architecture and Performance of Adaptive Mesh R…
We present a fully three-dimensional kinetic framework for modeling intense short pulse lasers interacting with dielectric materials. Our work modifies the open-source Particle-In-Cell (PIC) code EPOCH to include new models for molecular…
This work presents a comprehensive framework for the efficient implementation of finite-volume-based reacting flow solvers, specifically tailored for high speed propulsion applications. Using the exascale computing project (ECP) based AMReX…
The recent push for post-Moore computer architectures has introduced a wide variety of application-specific accelerators. One particular accelerator, the resistance network analogue, has been well received due to its ability to efficiently…
The paper presents a comparative analysis of different commercial and academic software. The comparison aims to examine how the integrated adaptive grid refinement methodologies can deal with challenging, electromagnetic-field related…
We report adaptive resolution molecular dynamics simulations of a flexible linear polymer in solution. The solvent, i.e., a liquid of tetrahedral molecules, is represented within a certain radius from the polymer's center of mass with a…
We investigate various block preconditioners for a low-order Raviart-Thomas discretization of the mixed Poisson problem on adaptive quadrilateral meshes. In addition to standard diagonal and Schur complement preconditioners, we present a…
Soft particles such as microgels and core-shell particles can undergo significant and anisotropic deformations when adsorbed to a liquid interface. This, in turn, leads to a complex phase behavior upon compression. Here we develop a…
In this work, we illustrate the connection between adaptive mesh refinement for finite element discretized PDEs and the recently developed \emph{bi-level regularization algorithm}. By adaptive mesh refinement according to data noise,…
Due to its flexible architecture, FPGAs support unique, deep hardware pipeline implementations for accelerating HPC applications. However, these devices are quite new in the HPC space, and thus, have been scarcely explored outside some…
We present a new implementation of the tracer particles algorithm based on a Monte Carlo approach for the Eulerian adaptive mesh refinement code Ramses. The purpose of tracer particles is to keep track of where fluid elements originate in…
We propose a parareal based time parallelization scheme in the phase-space for the particle-in-Fourier (PIF) discretization of the Vlasov-Poisson system used in kinetic plasma simulations. We use PIF with a coarse tolerance for the…
Complex, high-throughput data acquisition and processing systems, such as those used in high-energy physics experiments, are increasingly moving sophisticated pattern recognition and data compression algorithms closer to the sensors…
This work presents a high-order finite-difference adaptive mesh refinement (AMR) framework for robust simulation of shock-turbulence interaction problems. A staggered-grid arrangement, in which solution points are stored at cell centers…
The Poisson-Boltzmann equation is widely used to model molecular electrostatics; however, it is usually solved in linearised form because the sinh nonlinearity is challenging, limiting its applicability in highly charged systems such as…
Particle-in-Cell (PIC) simulation codes have wide applicability to first-principles modeling of multidimensional nonlinear plasma phenomena, including wake-field accelerators. This review addresses both finite difference and pseudo-spectral…
Machine learning interatomic potentials (MLIPs) enable atomistic simulations with near ab initio accuracy at significantly reduced computational cost, but their broader adoption is often limited by fragmented tooling, limited scalability,…
In this paper we describe in detail the computational algorithm used by our parallel multigrid elliptic equation solver with adaptive mesh refinement. Our code uses truncation error estimates to adaptively refine the grid as part of the…
Large-scale finite element simulations of complex physical systems governed by partial differential equations (PDE) crucially depend on adaptive mesh refinement (AMR) to allocate computational budget to regions where higher resolution is…
We introduce and derive the Fourier-enhanced 3D electrostatic field solver of the gyrokinetic full-f PIC code PICLS. The solver makes use of a Fourier representation in one periodic direction of the domain to make the solving of the system…
Implementation details and test cases of a newly developed hydrodynamic code, AMRA, are presented. The numerical scheme exploits the adaptive mesh refinement technique coupled to modern high-resolution schemes which are suitable for…