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Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…

Algebraic Topology · Mathematics 2018-01-03 Shiquan Ren , Chengyuan Wu , Stephane Bressan , Jie Wu

Detecting if a graph contains a $k$-Clique is one of the most fundamental problems in computer science. The asymptotically fastest algorithm runs in time $O(n^{\omega k/3})$, where $\omega$ is the exponent of Boolean matrix multiplication.…

Data Structures and Algorithms · Computer Science 2024-08-06 Amir Abboud , Nick Fischer , Yarin Shechter

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

The monography presents a new algorithm for finding the clique of maximal length in a nonseparable graph. The algorithm is based on the properties of the representation of a clique as a subset of the set of cycles with a length of three,…

Discrete Mathematics · Computer Science 2024-10-30 Sergey Kurapov , Maxim Davidovsky

We establish nearly optimal sample complexity bounds for testing the $\rho$-clique property in the dense graph model. Specifically, we show that it is possible to distinguish graphs on $n$ vertices that have a $\rho n$-clique from graphs…

Data Structures and Algorithms · Computer Science 2026-03-09 Eric Blais , Cameron Seth

Persistent homology was shown by Carlsson and Zomorodian to be homology of graded chain complexes with coefficients in the graded ring $\kk[t]$. As such, the behavior of persistence modules -- graded modules over $\kk[t]$ is an important…

Computational Geometry · Computer Science 2013-02-18 Primoz Skraba , Mikael Vejdemo-Johansson

Persistent homology is a relatively new tool often used for \emph{qualitative} analysis of intrinsic topological features in images and data originated from scientific and engineering applications. In this paper, we report novel…

Biomolecules · Quantitative Biology 2014-12-09 Kelin Xia , Xin Feng , Yiying Tong , Guo Wei We

Given a finite set in a metric space, the topological analysis generalizes hierarchical clustering using a 1-parameter family of homology groups to quantify connectivity in all dimensions. The connectivity is compactly described by the…

Computational Geometry · Computer Science 2016-07-22 Herbert Edelsbrunner , Hubert Wagner

Is detecting a $k$-clique in $k$-partite regular (hyper-)graphs as hard as in the general case? Intuition suggests yes, but proving this -- especially for hypergraphs -- poses notable challenges. Concretely, we consider a strong notion of…

Computational Complexity · Computer Science 2026-05-12 Nick Fischer , Marvin Künnemann , Mirza Redžić , Julian Stieß

Topological complexity is a homotopy invariant that measures the minimal number of continuous rules required for motion planning in a space. In this work, we introduce persistent analogs of topological complexity and its cohomological lower…

Algebraic Topology · Mathematics 2025-08-19 Facundo Mémoli , Ling Zhou

Persistent homology is a crucial invariant that is used in many areas to understand data. The $O(N^4)$ run time is a hindrance to its use on most large datasets. We give a parallelization method to utilize multi-core machines and clusters.…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-10 Michael G. Rawson

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of the space of data, a persistence barcode tracks the evolution of its homological features. In this…

Computational Geometry · Computer Science 2024-09-11 Salman Parsa , Bei Wang

The homology of Kontsevich's commutative graph complex parameterizes finite type invariants of odd dimensional manifolds. This {\it graph homology} is also the twisted homology of Outer Space modulo its boundary, so gives a nice point of…

Quantum Algebra · Mathematics 2010-08-25 James Conant , Ferenc Gerlits , Karen Vogtmann

Stratified digraphs are popular models for feedforward neural networks. However, computation of their path homologies has been limited to low dimensions due to high computational complexity. A recursive algorithm is proposed to compute…

Computational Geometry · Computer Science 2024-12-12 Zhengtong Zhu , Zhiyi Chi

The theory of dense graph limits comes with a natural sampling process which yields an inhomogeneous variant G(n,W) of the Erdos-Renyi random graph. Here we study the clique number of these random graphs. We establish the concentration of…

Combinatorics · Mathematics 2018-12-04 Martin Doležal , Jan Hladký , András Máthé

We consider the standard message passing model; we assume the system is fully synchronous: all processes start at the same time and time proceeds in synchronised rounds. In each round each vertex can transmit a different message of size…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-14 Y. Métivier , J. M. Robson , A. Zemmari

In this work, we present a constant-round algorithm for the $2$-ruling set problem in the Congested Clique model. As a direct consequence, we obtain a constant round algorithm in the MPC model with linear space-per-machine and optimal total…

Data Structures and Algorithms · Computer Science 2023-10-11 Mélanie Cambus , Fabian Kuhn , Shreyas Pai , Jara Uitto

We initiate the algorithmic study of retracting a graph into a cycle in the graph, which seeks a mapping of the graph vertices to the cycle vertices, so as to minimize the maximum stretch of any edge, subject to the constraint that the…

Data Structures and Algorithms · Computer Science 2019-04-29 Samuel Haney , Mehraneh Liaee , Bruce M. Maggs , Debmalya Panigrahi , Rajmohan Rajaraman , Ravi Sundaram

In this work, we use algebraic methods for studying distance computation and subgraph detection tasks in the congested clique model. Specifically, we adapt parallel matrix multiplication implementations to the congested clique, obtaining an…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-24 Keren Censor-Hillel , Petteri Kaski , Janne H. Korhonen , Christoph Lenzen , Ami Paz , Jukka Suomela

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen