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High-quality data accumulation is now becoming ubiquitous in the health domain. There is increasing opportunity to exploit rich data from normal subjects to improve supervised estimators in specific diseases with notorious data scarcity. We…

Machine Learning · Computer Science 2021-10-13 Marc-Andre Schulz , Bertrand Thirion , Alexandre Gramfort , Gaël Varoquaux , Danilo Bzdok

As digital medical imaging becomes more prevalent and archives increase in size, representation learning exposes an interesting opportunity for enhanced medical decision support systems. On the other hand, medical imaging data is often…

Computer Vision and Pattern Recognition · Computer Science 2018-07-25 Eduardo Pinho , Carlos Costa

The data made available for analysis are becoming more and more complex along several directions: high dimensionality, number of examples and the amount of labels per example. This poses a variety of challenges for the existing machine…

Machine Learning · Computer Science 2020-08-11 Matej Petković , Sašo Džeroski , Dragi Kocev

Compared to supervised learning, semi-supervised learning reduces the dependence of deep learning on a large number of labeled samples. In this work, we use a small number of labeled samples and perform data augmentation on unlabeled…

Machine Learning · Computer Science 2020-01-14 Qiuyu Zhu , Tiantian Li

Cell recognition is a fundamental task in digital histopathology image analysis. Point-based cell recognition (PCR) methods normally require a vast number of annotations, which is extremely costly, time-consuming and labor-intensive.…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Zhongyi Shui , Yizhi Zhao , Sunyi Zheng , Yunlong Zhang , Honglin Li , Shichuan Zhang , Xiaoxuan Yu , Chenglu Zhu , Lin Yang

Training a neural network with a large labeled dataset is still a dominant paradigm in computational histopathology. However, obtaining such exhaustive manual annotations is often expensive, laborious, and prone to inter and Intra-observer…

Computer Vision and Pattern Recognition · Computer Science 2021-11-03 Chetan L. Srinidhi , Seung Wook Kim , Fu-Der Chen , Anne L. Martel

In this paper, we present a new algorithm for semi-supervised representation learning. In this algorithm, we first find a vector representation for the labels of the data points based on their local positions in the space. Then, we map the…

Machine Learning · Computer Science 2020-08-05 Ershad Banijamali , Ali Ghodsi

Semi-supervised medical image segmentation has gained growing interest due to its ability to utilize unannotated data. The current state-of-the-art methods mostly rely on pseudo-labeling within a co-training framework. These methods depend…

Image and Video Processing · Electrical Eng. & Systems 2024-05-14 Suruchi Kumari , Pravendra Singh

Recently, it has become progressively more evident that classic diagnostic labels are unable to reliably describe the complexity and variability of several clinical phenotypes. This is particularly true for a broad range of neuropsychiatric…

Machine Learning · Computer Science 2024-02-28 Giovanna Maria Dimitri , Simeon Spasov , Andrea Duggento , Luca Passamonti , Pietro Li`o , Nicola Toschi

There has been an increasing interest in semi-supervised learning in the recent years because of the great number of datasets with a large number of unlabeled data but only a few labeled samples. Semi-supervised learning algorithms can work…

Machine Learning · Computer Science 2020-03-26 Pedro H. M. Braga , Hansenclever F. Bassani

Phenotypes are the observable characteristics of an organism arising from its response to the environment. Phenotypes associated with engineered and natural genetic variation are widely recorded using phenotype ontologies in model…

Quantitative Methods · Quantitative Biology 2015-05-26 Robert Hoehndorf , Paul N Schofield , Georgios V Gkoutos

Linear Mixed Models (LMMs) are important tools in statistical genetics. When used for feature selection, they allow to find a sparse set of genetic traits that best predict a continuous phenotype of interest, while simultaneously correcting…

Despite the remarkable performance of supervised medical image segmentation models, relying on a large amount of labeled data is impractical in real-world situations. Semi-supervised learning approaches aim to alleviate this challenge using…

Computer Vision and Pattern Recognition · Computer Science 2025-09-17 Yunyao Lu , Yihang Wu , Ahmad Chaddad , Tareef Daqqaq , Reem Kateb

Improving a semi-supervised image segmentation task has the option of adding more unlabelled images, labelling the unlabelled images or combining both, as neither image acquisition nor expert labelling can be considered trivial in most…

Image and Video Processing · Electrical Eng. & Systems 2019-08-23 Yunguan Fu , Maria R. Robu , Bongjin Koo , Crispin Schneider , Stijn van Laarhoven , Danail Stoyanov , Brian Davidson , Matthew J. Clarkson , Yipeng Hu

In this paper we present a new approach to solve semi-supervised classification tasks for biomedical applications, involving a supervised autoencoder network. We create a network architecture that encodes labels into the latent space of an…

Machine Learning · Computer Science 2022-08-24 Cyprien Gille , Frederic Guyard , Michel Barlaud

In some machine learning applications the availability of labeled instances for supervised classification is limited while unlabeled instances are abundant. Semi-supervised learning algorithms deal with these scenarios and attempt to…

Neural and Evolutionary Computing · Computer Science 2023-03-07 Roberto Santana , Ivan Hidalgo-Cenalmor , Unai Garciarena , Alexander Mendiburu , Jose Antonio Lozano

Rare diseases affect a relatively small number of people, which limits investment in research for treatments and cures. Developing an efficient method for rare disease detection is a crucial first step towards subsequent clinical research.…

Machine Learning · Computer Science 2018-12-04 Wenyuan Li , Yunlong Wang , Yong Cai , Corey Arnold , Emily Zhao , Yilian Yuan

Multi-label feature selection (FS) reduces the dimensionality of multi-label data by removing irrelevant, noisy, and redundant features, thereby boosting the performance of multi-label learning models. However, existing methods typically…

Machine Learning · Computer Science 2025-11-25 Afsaneh Mahanipour , Hana Khamfroush

Deep neural networks produce state-of-the-art results when trained on a large number of labeled examples but tend to overfit when small amounts of labeled examples are used for training. Creating a large number of labeled examples requires…

Computer Vision and Pattern Recognition · Computer Science 2021-09-13 Attaullah Sahito , Eibe Frank , Bernhard Pfahringer

Advancements in clinical treatment are increasingly constrained by the limitations of supervised learning techniques, which depend heavily on large volumes of annotated data. The annotation process is not only costly but also demands…

Computer Vision and Pattern Recognition · Computer Science 2024-05-20 Pranav Singh , Raviteja Chukkapalli , Shravan Chaudhari , Luoyao Chen , Mei Chen , Jinqian Pan , Craig Smuda , Jacopo Cirrone