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A general framework to describe a vast majority of biology-inspired systems is to model them as stochastic processes in which multiple couplings are in play at the same time. Molecular motors, chemical reaction networks, catalytic enzymes,…

Statistical Mechanics · Physics 2020-11-25 Daniel M. Busiello , Deepak Gupta , Amos Maritan

Adaptive dimensionality reduction in high-dimensional problems is a key topic in statistics. The multiplicative gamma process takes a relevant step in this direction, but improved studies on its properties are required to ease…

Methodology · Statistics 2018-09-11 Daniele Durante

Matrix multiplication is a fundamental operation in both training of neural networks and inference. To accelerate matrix multiplication, Graphical Processing Units (GPUs) provide it implemented in hardware. Due to the increased throughput…

Mathematical Software · Computer Science 2026-04-07 Faizan A. Khattak , Mantas Mikaitis

This document presents a combinatorial framework for analyzing assembly systems using generating functions. We explore the theory through concrete examples, such as linear polymers, and develop recursive equations to characterize valid…

Combinatorics · Mathematics 2025-01-22 Andrés Ortiz-Muñoz

We introduce a prime number generator in the form of a stochastic algorithm. The character of such algorithm gives rise to a continuous phase transition which distinguishes a phase where the algorithm is able to reduce the whole system of…

Computational Complexity · Computer Science 2009-11-13 Lucas Lacasa , Bartolo Luque , Octavio Miramontes

Cell division is a process that involves many biochemical steps and complex biophysical mechanisms. To simplify the understanding of what triggers cell division, three basic models that subsume more microscopic cellular processes associated…

Cell Behavior · Quantitative Biology 2020-03-30 Mingtao Xia , Chris D. Greenman , Tom Chou

Modeling of dynamic processes in nuclear reactors is carried out, mainly, on the basis of the multigroup diffusion approximation for the neutron flux. The basic model includes a multidimensional set of coupled parabolic equations and…

Computational Engineering, Finance, and Science · Computer Science 2017-06-19 Alexander V. Avvakumov , Valery F. Strizhov , Petr N. Vabishchevich , Alexander O. Vasilev

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

We study approximations of evolving probability measures by an interacting particle system. The particle system dynamics is a combination of independent Markov chain moves and importance sampling/resampling steps. Under global regularity…

Probability · Mathematics 2011-12-12 Andreas Eberle , Carlo Marinelli

Non-electromagnetic emission from cosmic ray particles accelerated in extreme environments has been studied using different variations of semi-classical formalisms. As the energy loss mechanisms of such particles is of great interest, one…

High Energy Physics - Phenomenology · Physics 2020-01-21 Douglas Fregolente

Mathematical methods provide useful framework for the analysis and design of complex systems. In newer contexts such as biology, however, there is a need to both adapt existing methods as well as to develop new ones. Using a combination of…

Molecular Networks · Quantitative Biology 2017-12-06 Abhishek Dey , Shaunak Sen

Following extensive numerical experiments, it has been suggested that the evolution of competing computer programs in artificial life simulations shows signs of being a self-organized critical process. The primary evidence for this claim…

adap-org · Physics 2009-10-30 M. E. J. Newman , Simon M. Fraser , Kim Sneppen , William A. Tozier

The thermodynamics of quantum phase transitions has long been a rich area of research, providing numerous insights and enhancing our understanding of this important phenomenon. This theoretical framework has been well-developed specially…

Quantum Physics · Physics 2024-12-05 Andesson B. Nascimento , Lucas C. Céleri

Non-equilibrium critical phenomena generally exist in many dynamic systems, like chemical reactions and some driven-dissipative {reactive} particle systems. Here, by using computer simulation and theoretical analysis, we demonstrate the…

Soft Condensed Matter · Physics 2021-05-26 Qun-Li Lei , Hao Hu , Ran Ni

A collision between a proton and a heavy nucleus at ultrarelativistic energy creates particles whose rapidity distribution is asymmetric, with more particles emitted in the direction of the nucleus than in the direction of the proton. This…

Nuclear Theory · Physics 2024-07-23 Rupam Samanta , Jean-Yves Ollitrault

We give a mathematical framework to describe the evolution of an open quantum systems subjected to finitely many interactions with classical apparatuses. The systems in question may be composed of distinct, spatially separated subsystems…

General Relativity and Quantum Cosmology · Physics 2007-05-23 R. Blute , I. T. Ivanov , P. Panangaden

Numerical methods play an ever more important role in astrophysics. This is especially true in theoretical works, but of course, even in purely observational projects, data analysis without massive use of computational methods has become…

Astrophysics of Galaxies · Physics 2014-12-18 Volker Springel

We consider a branching random walk in a random space-time environment of disasters where each particle is killed when meeting a disaster. This extends the model of the "random walk in a disastrous random environment" introduced by [15]. We…

Probability · Mathematics 2017-09-13 Nina Gantert , Stefan Junk

Genetic Programming is an evolutionary algorithm that generates computer programs, or mathematical expressions, to solve complex problems. In this Guide, we demonstrate how to use Genetic Programming to develop surrogate models to mitigate…

We study the evolution of the universe which contains a multiple number of non-relativistic scalar fields decaying into both radiation and pressureless matter. We present a powerful analytic formalism to calculate the matter and radiation…

Astrophysics · Physics 2009-11-13 Ki-Young Choi , Jinn-Ouk Gong