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Hierarchical Clustering trees have been widely accepted as a useful form of clustering data, resulting in a prevalence of adopting fields including phylogenetics, image analysis, bioinformatics and more. Recently, Dasgupta (STOC 16')…

Data Structures and Algorithms · Computer Science 2020-06-04 Noga Alon , Yossi Azar , Danny Vainstein

The development of algorithms for hierarchical clustering has been hampered by a shortage of precise objective functions. To help address this situation, we introduce a simple cost function on hierarchies over a set of points, given…

Data Structures and Algorithms · Computer Science 2015-10-20 Sanjoy Dasgupta

Hierarchical clustering is a popular unsupervised data analysis method. For many real-world applications, we would like to exploit prior information about the data that imposes constraints on the clustering hierarchy, and is not captured by…

Data Structures and Algorithms · Computer Science 2018-07-17 Vaggos Chatziafratis , Rad Niazadeh , Moses Charikar

Hierarchical clustering over graphs is a fundamental task in data mining and machine learning with applications in domains such as phylogenetics, social network analysis, and information retrieval. Specifically, we consider the recently…

Data Structures and Algorithms · Computer Science 2022-06-16 Arpit Agarwal , Sanjeev Khanna , Huan Li , Prathamesh Patil

The Minimum Quartet Tree Cost problem is to construct an optimal weight tree from the $3{n \choose 4}$ weighted quartet topologies on $n$ objects, where optimality means that the summed weight of the embedded quartet topologies is optimal…

Machine Learning · Computer Science 2014-09-16 Rudi L. Cilibrasi , Paul M. B. Vitanyi

Meila (2018) introduces an optimization based method called the Sublevel Set method, to guarantee that a clustering is nearly optimal and "approximately correct" without relying on any assumptions about the distribution that generated the…

Machine Learning · Statistics 2020-07-07 Marina Meila

One of the main challenges for hierarchical clustering is how to appropriately identify the representative points in the lower level of the cluster tree, which are going to be utilized as the roots in the higher level of the cluster tree…

Machine Learning · Statistics 2021-11-16 Wen-Bo Xie , Zhen Liu , Jaideep Srivastava

Hierarchical clustering is a fundamental task in data analysis, yet for a long time it lacked a principled objective function. Dasgupta [STOC 2016] initiated a formal framework by introducing a discrete objective function for cluster trees.…

Data Structures and Algorithms · Computer Science 2026-04-28 Ryuki Tsukuba , Kazutoshi Ando

In this paper we offer a new perspective on the well established agglomerative clustering algorithm, focusing on recovery of hierarchical structure. We recommend a simple variant of the standard algorithm, in which clusters are merged by…

Machine Learning · Statistics 2024-03-04 Annie Gray , Alexander Modell , Patrick Rubin-Delanchy , Nick Whiteley

Average-link is widely recognized as one of the most popular and effective methods for building hierarchical agglomerative clustering. The available theoretical analyses show that this method has a much better approximation than other…

Machine Learning · Computer Science 2024-11-11 Eduardo Sany Laber , Miguel Bastista

Hierarchical clustering (HC) algorithms are generally limited to small data instances due to their runtime costs. Here we mitigate this shortcoming and explore fast HC algorithms based on random projections for single (SLC) and average…

Information Retrieval · Computer Science 2014-01-24 Johannes Schneider , Michail Vlachos

Hierarchical clustering is a powerful tool for exploratory data analysis, organizing data into a tree of clusterings from which a partition can be chosen. This paper generalizes these ideas by proving that, for any reasonable hierarchy, one…

Machine Learning · Computer Science 2025-11-13 Andrew Draganov , Pascal Weber , Rasmus Skibdahl Melanchton Jørgensen , Anna Beer , Claudia Plant , Ira Assent

Hierarchical clustering is a stronger extension of one of today's most influential unsupervised learning methods: clustering. The goal of this method is to create a hierarchy of clusters, thus constructing cluster evolutionary history and…

Data Structures and Algorithms · Computer Science 2021-01-14 MohammadTaghi Hajiaghayi , Marina Knittel

Cost functions for non-hierarchical pairwise clustering are introduced, in the probabilistic autoencoder framework, by the request of maximal average similarity between the input and the output of the autoencoder. The partition provided by…

Disordered Systems and Neural Networks · Physics 2009-11-07 L. Angelini , L. Nitti , M. Pellicoro , S. Stramaglia

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

We develop a novel algorithm, Predictive Hierarchical Clustering (PHC), for agglomerative hierarchical clustering of current procedural terminology (CPT) codes. Our predictive hierarchical clustering aims to cluster subgroups, not…

Methodology · Statistics 2017-08-03 Elizabeth C. Lorenzi , Stephanie L. Brown , Zhifei Sun , Katherine Heller

Hierarchical clustering is one of the most powerful solutions to the problem of clustering, on the grounds that it performs a multi scale organization of the data. In recent years, research on hierarchical clustering methods has attracted…

Machine Learning · Computer Science 2019-08-02 Antonia Korba

In this paper, we introduce a local search algorithm for hierarchical clustering. For the local step, we consider a tree re-arrangement operation, known as the {\em interchange}, which involves swapping two closely positioned sub-trees…

Data Structures and Algorithms · Computer Science 2024-05-28 Hossein Jowhari

Hierarchical Clustering is a popular unsupervised machine learning method with decades of history and numerous applications. We initiate the study of differentially private approximation algorithms for hierarchical clustering under the…

Machine Learning · Computer Science 2023-05-25 Jacob Imola , Alessandro Epasto , Mohammad Mahdian , Vincent Cohen-Addad , Vahab Mirrokni

Hypergraph partitioning is an important problem in machine learning, computer vision and network analytics. A widely used method for hypergraph partitioning relies on minimizing a normalized sum of the costs of partitioning hyperedges…

Machine Learning · Computer Science 2017-11-06 Pan Li , Olgica Milenkovic