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Despite diverse efforts to mine various modalities of medical data, the conversations between physicians and patients at the time of care remain an untapped source of insights. In this paper, we leverage this data to extract structured…

Machine Learning · Computer Science 2020-07-15 Kundan Krishna , Amy Pavel , Benjamin Schloss , Jeffrey P. Bigham , Zachary C. Lipton

Generating texts from structured data (e.g., a table) is important for various natural language processing tasks such as question answering and dialog systems. In recent studies, researchers use neural language models and encoder-decoder…

Computation and Language · Computer Science 2017-09-04 Lei Sha , Lili Mou , Tianyu Liu , Pascal Poupart , Sujian Li , Baobao Chang , Zhifang Sui

Clinical notes, which can be embedded into electronic medical records, document patient care delivery and summarize interactions between healthcare providers and patients. These clinical notes directly inform patient care and can also…

Computation and Language · Computer Science 2022-03-25 Suzanna Schmeelk , Martins Samuel Dogo , Yifan Peng , Braja Gopal Patra

Natural reading orders of words are crucial for information extraction from form-like documents. Despite recent advances in Graph Convolutional Networks (GCNs) on modeling spatial layout patterns of documents, they have limited ability to…

Computation and Language · Computer Science 2021-06-22 Chen-Yu Lee , Chun-Liang Li , Chu Wang , Renshen Wang , Yasuhisa Fujii , Siyang Qin , Ashok Popat , Tomas Pfister

A large percentage of medical information is in unstructured text format in electronic medical record systems. Manual extraction of information from clinical notes is extremely time consuming. Natural language processing has been widely…

Information Retrieval · Computer Science 2019-08-16 Dianbo Liu , Dmitriy Dligach , Timothy Miller

Embedding words in a vector space has gained a lot of attention in recent years. While state-of-the-art methods provide efficient computation of word similarities via a low-dimensional matrix embedding, their motivation is often left…

Computation and Language · Computer Science 2016-09-29 Shihao Ji , Hyokun Yun , Pinar Yanardag , Shin Matsushima , S. V. N. Vishwanathan

Recent approaches for visually-rich document understanding (VrDU) uses manually annotated semantic groups, where a semantic group encompasses all semantically relevant but not obviously grouped words. As OCR tools are unable to…

Computer Vision and Pattern Recognition · Computer Science 2024-10-17 Zhouqiang Jiang , Bowen Wang , Junhao Chen , Yuta Nakashima

Despite the success of distributional semantics, composing phrases from word vectors remains an important challenge. Several methods have been tried for benchmark tasks such as sentiment classification, including word vector averaging,…

Computation and Language · Computer Science 2015-12-14 Pranjal Singh , Amitabha Mukerjee

Background: Electronic health records (EHRs) are a valuable resource for data-driven medical research. However, the presence of protected health information (PHI) makes EHRs unsuitable to be shared for research purposes. De-identification,…

Computation and Language · Computer Science 2024-04-11 Aleksandar Kovačević , Bojana Bašaragin , Nikola Milošević , Goran Nenadić

Visual Information Extraction (VIE) converts unstructured document images into structured formats like JSON, critical for medical applications such as report analysis and online consultations. Traditional methods rely on OCR and language…

Computation and Language · Computer Science 2025-06-17 Lijun Liu , Ruiyang Li , Zhaocheng Liu , Chenglin Zhu , Chong Li , Jiehan Cheng , Qiang Ju , Jian Xie

Electronic health record (EHR) systems are used extensively throughout the healthcare domain. However, data interchangeability between EHR systems is limited due to the use of different coding standards across systems. Existing methods of…

Computation and Language · Computer Science 2019-05-07 Rohollah Soltani , Alexandre Tomberg

Text classification tasks which aim at harvesting and/or organizing information from electronic health records are pivotal to support clinical and translational research. However these present specific challenges compared to other…

Computation and Language · Computer Science 2020-05-15 Aurelie Mascio , Zeljko Kraljevic , Daniel Bean , Richard Dobson , Robert Stewart , Rebecca Bendayan , Angus Roberts

To overcome the limitations of manual administrative coding in geriatric Cardiovascular Risk Management, this study introduces an automated classification framework leveraging unstructured Electronic Health Records (EHRs). Using a dataset…

Computation and Language · Computer Science 2026-03-11 Jacopo Vitale , David Della Morte , Luca Bacco , Mario Merone , Mark de Groot , Saskia Haitjema , Leandro Pecchia , Bram van Es

Medical systematic reviews typically require assessing all the documents retrieved by a search. The reason is two-fold: the task aims for ``total recall''; and documents retrieved using Boolean search are an unordered set, and thus it is…

Information Retrieval · Computer Science 2022-12-20 Shuai Wang , Harrisen Scells , Bevan Koopman , Guido Zuccon

The utilization of Electronic Health Records (EHRs) for clinical risk prediction is on the rise. However, strict privacy regulations limit access to comprehensive health records, making it challenging to apply standard machine learning…

Computation and Language · Computer Science 2023-12-08 Angeela Acharya , Sulabh Shrestha , Anyi Chen , Joseph Conte , Sanja Avramovic , Siddhartha Sikdar , Antonios Anastasopoulos , Sanmay Das

Background: Widespread adoption of electronic health records (EHRs) has enabled secondary use of EHR data for clinical research and healthcare delivery. Natural language processing (NLP) techniques have shown promise in their capability to…

Information Retrieval · Computer Science 2021-06-15 Sijia Liu , Yanshan Wang , Andrew Wen , Liwei Wang , Na Hong , Feichen Shen , Steven Bedrick , William Hersh , Hongfang Liu

Although embedded vector representations of words offer impressive performance on many natural language processing (NLP) applications, the information of ordered input sequences is lost to some extent if only context-based samples are used…

Computation and Language · Computer Science 2020-02-18 Bin Wang , Fenxiao Chen , Angela Wang , C. -C. Jay Kuo

Electronic Health Records (EHRs) have become the primary form of medical data-keeping across the United States. Federal law restricts the sharing of any EHR data that contains protected health information (PHI). De-identification, the…

Computation and Language · Computer Science 2021-03-26 Abdullah Ahmed , Adeel Abbasi , Carsten Eickhoff

Due to the dynamic nature of human language, automatic speech recognition (ASR) systems need to continuously acquire new vocabulary. Out-Of-Vocabulary (OOV) words, such as trending words and new named entities, pose problems to modern ASR…

Computation and Language · Computer Science 2023-02-22 Leyuan Qu , Cornelius Weber , Stefan Wermter

Using pretrained word embeddings has been shown to be a very effective way in improving the performance of natural language processing tasks. In fact almost any natural language tasks that can be thought of has been improved by these…

Computation and Language · Computer Science 2021-04-19 Gary Phua , Shaowei Lin , Dario Poletti