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We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

This paper proposes a stable volume and a stable volume variant, referred to as a stable sub-volume, for more reliable data analysis using persistent homology. In prior research, an optimal cycle and similar ideas have been proposed to…

Algebraic Topology · Mathematics 2022-01-25 Ippei Obayashi

Multidimensional persistence studies topological features of shapes by analyzing the lower level sets of vector-valued functions. The rank invariant completely determines the multidimensional analogue of persistent homology groups. We prove…

Algebraic Topology · Mathematics 2009-08-04 Andrea Cerri , Barbara Di Fabio , Massimo Ferri , Patrizio Frosini , Claudia Landi

In many scientific and technological contexts we have only a poor understanding of the structure and details of appropriate mathematical models. We often, therefore, need to compare different models. With available data we can use formal…

Algebraic Topology · Mathematics 2021-11-04 Sean T. Vittadello , Michael P. H. Stumpf

Multiparameter persistence modules come up naturally in topological data analysis and topological robotics. Given a metric graph $(X,\delta)$, the second configuration space of $(X,\delta)$ with proximity parameters (for example, the…

Algebraic Topology · Mathematics 2023-10-10 Wenwen Li

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

Algebraic Topology · Mathematics 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

Distances have a ubiquitous role in persistent homology, from the direct comparison of homological representations of data to the definition and optimization of invariants. In this article we introduce a family of parametrized pseudometrics…

Algebraic Topology · Mathematics 2024-08-23 Jens Agerberg , Andrea Guidolin , Isaac Ren , Martina Scolamiero

The paper deals with the problem of reconstructing the topological structure of a network of dynamical systems. A distance function is defined in order to evaluate the "closeness" of two processes and a few useful mathematical properties…

Chaotic Dynamics · Physics 2008-12-02 Donatello W. Materassi , Giacomo W. Innocenti

In Al2O3 suspensions, depending on the experimental conditions very different microstructures can be found, comprising fluid like suspensions, a repulsive structure, and a clustered microstructure. For technical processing in ceramics, the…

Soft Condensed Matter · Physics 2007-05-23 Martin Hecht , Jens Harting , Hans J. Herrmann

The natural pseudo-distance of spaces endowed with filtering functions is precious for shape classification and retrieval; its optimal estimate coming from persistence diagrams is the bottleneck distance, which unfortunately suffers from…

Algebraic Topology · Mathematics 2015-07-09 Barbara Di Fabio , Massimo Ferri

We introduce topological methods for quantifying spatially heterogeneous dynamics, and use these tools to analyze particle-tracking data for a quasi-two-dimensional granular system of air-fluidized beads on approach to jamming. In…

Soft Condensed Matter · Physics 2007-08-30 A. R. Abate , D. J. Durian

One of the primary areas of interest in applied algebraic topology is persistent homology, and, more specifically, the persistence diagram. Persistence diagrams have also become objects of interest in topological data analysis. However,…

Methodology · Statistics 2018-04-06 Eric Berry , Yen-Chi Chen , Jessi Cisewski-Kehe , Brittany Terese Fasy

Stability of persistence diagrams under slight perturbations is a key characteristic behind the validity and growing popularity of topological data analysis in exploring real-world data. Central to this stability is the use of Bottleneck…

Computational Geometry · Computer Science 2020-10-12 Paul Samuel Ignacio , Jay-Anne Bulauan , David Uminsky

Materials property predictions have improved from advances in machine learning algorithms, delivering materials discoveries and novel insights through data-driven models of structure-property relationships. Nearly all available models rely…

Materials Science · Physics 2022-04-13 Yiqun Wang , Xiao-Jie Zhang , Fei Xia , Elsa A. Olivetti , Ram Seshadri , James M. Rondinelli

This paper presents the first approach to visualize the importance of topological features that define classes of data. Topological features, with their ability to abstract the fundamental structure of complex data, are an integral…

Machine Learning · Computer Science 2023-09-26 Yu Qin , Brittany Terese Fasy , Carola Wenk , Brian Summa

We develop a novel hierarchy for zero-dimensional persistence pairs, i.e., connected components, which is capable of capturing more fine-grained spatial relations between persistence pairs. Our work is motivated by a lack of spatial…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

The hierarchy associated to clusters in the HDBSCAN algorithm has layers, which are defined by cardinality. The layers define a layer subposet of the HDBSCAN hierarchy, which is a strong deformation retract and admits a stability analysis.…

Algebraic Topology · Mathematics 2023-03-14 J. F. Jardine

The use of neural networks in safety-critical systems requires safe and robust models, due to the existence of adversarial attacks. Knowing the minimal adversarial perturbation of any input x, or, equivalently, knowing the distance of x…

Machine Learning · Computer Science 2022-09-12 Fabio Brau , Giulio Rossolini , Alessandro Biondi , Giorgio Buttazzo

The topology of the large-scale structure of the universe contains valuable information on the underlying cosmological parameters. While persistent homology can extract this topological information, the optimal method for parameter…

Cosmology and Nongalactic Astrophysics · Physics 2025-07-08 Jacky H. T. Yip , Adam Rouhiainen , Gary Shiu

A relational dataset is often analyzed by optimally assigning a label to each element through clustering or ordering. While similar characterizations of a dataset would be achieved by both clustering and ordering methods, the former has…

Machine Learning · Computer Science 2023-04-10 Tatsuro Kawamoto , Masaki Ochi , Teruyoshi Kobayashi
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