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Related papers: Interpreting Encoding and Decoding Models

200 papers

Encoding models enable measurement of how our brains represent sensory inputs using electro-and magneto-encephalography (MEEG). Evaluating how closely encoding models reflect the underlying brain functions is a crucial premise for model…

Neurons and Cognition · Quantitative Biology 2026-04-17 Giovanni M. Di Liberto

Addressing the question of visualising human mind could help us to find regions that are associated with observed cognition and responsible for expressing the elusive mental image, leading to a better understanding of cognitive function.…

Neurons and Cognition · Quantitative Biology 2021-02-11 Pan Wang , Rui Zhou , Shuo Wang , Ling Li , Wenjia Bai , Jialu Fan , Chunlin Li , Peter Childs , Yike Guo

Deep learning (DL) models find increasing application in mental state decoding, where researchers seek to understand the mapping between mental states (e.g., perceiving fear or joy) and brain activity by identifying those brain regions (and…

Neurons and Cognition · Quantitative Biology 2022-10-17 Armin W. Thomas , Christopher Ré , Russell A. Poldrack

Functional MRI (fMRI) has become the most common method for investigating the human brain. However, fMRI data present some complications for statistical analysis and modeling. One recently developed approach to these data focuses on…

Applications · Statistics 2015-03-19 Vincent Q. Vu , Pradeep Ravikumar , Thomas Naselaris , Kendrick N. Kay , Jack L. Gallant , Bin Yu

Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

Probing is widely used to study which features can be decoded from language model representations. However, the common decoding probe approach has two limitations that we aim to solve with our new encoding probe approach: contributions of…

Computation and Language · Computer Science 2026-05-04 Gaofei Shen , Martijn Bentum , Tom Lentz , Afra Alishahi , Grzegorz Chrupała

This paper formulates a generalized classification algorithm with an application to classifying (or `decoding') neural activity in the brain. Medical doctors and researchers have long been interested in how brain activity correlates to body…

Optimization and Control · Mathematics 2015-03-17 Cary Humber , Kazufumi Ito , Chad Bouton

Pattern recognition in neuroimaging distinguishes between two types of models: encoding- and decoding models. This distinction is based on the insight that brain state features, that are found to be relevant in an experimental paradigm,…

Machine Learning · Statistics 2015-12-16 Sebastian Weichwald , Bernhard Schölkopf , Tonio Ball , Moritz Grosse-Wentrup

With the continue development of Convolutional Neural Networks (CNNs), there is a growing concern regarding representations that they encode internally. Analyzing these internal representations is referred to as model interpretation. While…

Computer Vision and Pattern Recognition · Computer Science 2023-05-18 Hamed Behzadi-Khormouji , José Oramas

Many cognitive neuroscience studies use large feature sets to predict and interpret brain activity patterns. Feature sets take many forms, from human stimulus annotations to representations in deep neural networks. Of crucial importance in…

Neurons and Cognition · Quantitative Biology 2022-12-07 Anna A. Ivanova , Martin Schrimpf , Stefano Anzellotti , Noga Zaslavsky , Evelina Fedorenko , Leyla Isik

The multimodal models used in the emerging field at the intersection of computational linguistics and computer vision implement the bottom-up processing of the `Hub and Spoke' architecture proposed in cognitive science to represent how the…

Computation and Language · Computer Science 2019-04-15 Ravi Shekhar , Ece Takmaz , Raquel Fernández , Raffaella Bernardi

Decoding brain imaging data are gaining popularity, with applications in brain-computer interfaces and the study of neural representations. Decoding is typicallysubject-specific and does not generalise well over subjects, due to high…

Machine Learning · Computer Science 2024-01-22 Richard Csaky , Mats Van Es , Oiwi Parker Jones , Mark Woolrich

Despite differing from the human language processing mechanism in implementation and algorithms, current language models demonstrate remarkable human-like or surpassing language capabilities. Should computational language models be employed…

Computation and Language · Computer Science 2024-03-21 Shaonan Wang , Jingyuan Sun , Yunhao Zhang , Nan Lin , Marie-Francine Moens , Chengqing Zong

To study information processing in the brain, neuroscientists manipulate experimental stimuli while recording participant brain activity. They can then use encoding models to find out which brain "zone" (e.g. which region of interest,…

Neurons and Cognition · Quantitative Biology 2022-02-22 Mariya Toneva , Jennifer Williams , Anand Bollu , Christoph Dann , Leila Wehbe

Language models have recently been shown capable of performing regression wherein numeric predictions are represented as decoded strings. In this work, we provide theoretical grounds for this capability and furthermore investigate the…

Machine Learning · Computer Science 2025-08-13 Xingyou Song , Dara Bahri

We introduce a framework for reasoning about what meaning is captured by the neurons in a trained neural network. We provide a strategy for discovering meaning by training a second model (referred to as an observer model) to classify the…

Machine Learning · Computer Science 2021-03-16 Eric E. Allen

There are two major questions that neuroimaging studies attempt to answer: First, how are sensory stimuli represented in the brain (which we term the stimulus-based setting)? And, second, how does the brain generate cognition (termed the…

Neurons and Cognition · Quantitative Biology 2017-05-01 Sebastian Weichwald , Moritz Grosse-Wentrup

Linear models are widely used in computational neuroimaging to identify biomarkers associated with brain pathologies. However, interpreting the learned weights remains challenging, as they do not always yield clinically meaningful insights.…

Machine Learning · Computer Science 2026-04-23 Sara Petiton , Antoine Grigis , Raphaël Vock , Edouard Duchesnay

The field of computational modeling of the brain is advancing so rapidly that now it is possible to model large scale networks representing different brain regions with a high level of biological detail in terms of numbers and synapses. For…

Neural network (connectionist) models are designed to encode image features and provide the building blocks for object and shape recognition. These models generally call for: a) initial diffuse connections from one neuron population to…

Neurons and Cognition · Quantitative Biology 2018-01-09 Ernest Greene