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We explore pseudometrics for directed graphs in order to better understand their topological properties. The directed flag complex associated to a directed graph provides a useful bridge between network science and topology. Indeed, it has…

Algebraic Topology · Mathematics 2021-07-26 Ana Lucia Garcia-Pulido , Kathryn Hess , Jane Tan , Katharine Turner , Bei Wang , Naya Yerolemou

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Finding a new mathematical representations for graph, which allows direct comparison between different graph structures, is an open-ended research direction. Having such a representation is the first prerequisite for a variety of machine…

Methodology · Statistics 2014-04-21 Anshumali Shrivastava , Ping Li

Two models are introduced to investigate graph matching in the presence of corrupt nodes. The weak model, inspired by biological networks, allows one or both networks to have a positive fraction of molecular entities interact randomly with…

Statistics Theory · Mathematics 2023-11-02 Taha Ameen , Bruce Hajek

We present a novel graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of "motif-hubs" (multiple overlapping significant…

Disordered Systems and Neural Networks · Physics 2007-05-23 Etay Ziv , Robin Koytcheff , Manuel Middendorf , Chris Wiggins

Graph learning from data represents a canonical problem that has received substantial attention in the literature. However, insufficient work has been done in incorporating prior structural knowledge onto the learning of underlying…

Machine Learning · Statistics 2019-04-23 Sandeep Kumar , Jiaxi Ying , José Vinícius de M. Cardoso , Daniel Palomar

We propose graph kernels based on subgraph matchings, i.e. structure-preserving bijections between subgraphs. While recently proposed kernels based on common subgraphs (Wale et al., 2008; Shervashidze et al., 2009) in general can not be…

Machine Learning · Computer Science 2012-07-03 Nils Kriege , Petra Mutzel

We study the problem of graph structure identification, i.e., of recovering the graph of dependencies among time series. We model these time series data as components of the state of linear stochastic networked dynamical systems. We assume…

Machine Learning · Computer Science 2023-06-29 Sérgio Machado , Anirudh Sridhar , Paulo Gil , Jorge Henriques , José M. F. Moura , Augusto Santos

The largest balanced element in signed graphs plays a vital role in helping researchers understand the fundamental structure of the graph, as it reveals valuable information about the complex relationships between vertices in the network.…

Social and Information Networks · Computer Science 2025-01-16 Muhieddine Shebaro , Jelena Tešić

Graphical models are commonly used to represent conditional dependence relationships between variables. There are multiple methods available for exploring them from high-dimensional data, but almost all of them rely on the assumption that…

Machine Learning · Statistics 2020-04-22 Tianxi Li , Cheng Qian , Elizaveta Levina , Ji Zhu

Multiplex graphs, characterised by their layered structure, exhibit informative interdependencies within layers that are crucial for understanding complex network dynamics. Quantifying the interaction and shared information among these…

Statistics Theory · Mathematics 2024-05-24 Anda Skeja , Sofia C. Olhede

Graphs are a powerful way to model interactions and relationships in data from a wide variety of application domains. In this setting, entities represented by vertices at the "center" of the graph are often more important than those…

Social and Information Networks · Computer Science 2014-11-06 Michael P. O'Brien , Blair D. Sullivan

Virtually all network analyses involve structural measures between pairs of vertices, or of the vertices themselves, and the large amount of symmetry present in real-world complex networks is inherited by such measures. This has practical…

Combinatorics · Mathematics 2020-08-05 Rubén J. Sánchez-García

The coarsest approximation of the structure of a complex network, such as the Internet, is a simple undirected unweighted graph. This approximation, however, loses too much detail. In reality, objects represented by vertices and edges in…

Networking and Internet Architecture · Computer Science 2009-11-02 Xenofontas Dimitropoulos , Dmitri Krioukov , Amin Vahdat , George Riley

Characterizing graphs by their spectra is a fundamental and challenging problem in spectral graph theory, which has received considerable attention in recent years. A major unsolved conjecture in this area is Haemers' conjecture which…

Combinatorics · Mathematics 2024-10-04 Wei Wang , Wei Wang

Comparison among graphs is ubiquitous in graph analytics. However, it is a hard task in terms of the expressiveness of the employed similarity measure and the efficiency of its computation. Ideally, graph comparison should be invariant to…

Social and Information Networks · Computer Science 2018-05-30 Anton Tsitsulin , Davide Mottin , Panagiotis Karras , Alex Bronstein , Emmanuel Müller

A wide variety of application domains are concerned with data consisting of entities and their relationships or connections, formally represented as graphs. Within these diverse application areas, a common problem of interest is the…

Social and Information Networks · Computer Science 2016-09-06 Benjamin A. Miller , Michelle S. Beard , Patrick J. Wolfe , Nadya T. Bliss

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

Spectral graph convolutional networks are generalizations of standard convolutional networks for graph-structured data using the Laplacian operator. A common misconception is the instability of spectral filters, i.e. the impossibility to…

Machine Learning · Computer Science 2020-12-21 Axel Nilsson , Xavier Bresson

This paper proposes a blind detection problem for low pass graph signals. Without assuming knowledge of the exact graph topology, we aim to detect if a set of graph signal observations are generated from a low pass graph filter. Our problem…

Signal Processing · Electrical Eng. & Systems 2024-06-24 Chenyue Zhang , Yiran He , Hoi-To Wai